{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":266800054,"defaultBranch":"main","name":"Pharmacogenetic-Analysis-Pipeline","ownerLogin":"Tuks-ICMM","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-05-25T14:27:10.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/86601489?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1708178911.0","currentOid":""},"activityList":{"items":[{"before":"f74486f84a29c2c13fdc870b0abc431ed27a634b","after":"ac8354ce560119ada55b6837d99cd5f173772f27","ref":"refs/heads/VEP-Parsing-Overhaul","pushedAt":"2024-08-08T13:47:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Upload recent changes to workflow","shortMessageHtmlLink":"Upload recent changes to workflow"}},{"before":"0431136d9b04621452498b7da679aee55989877d","after":"f74486f84a29c2c13fdc870b0abc431ed27a634b","ref":"refs/heads/VEP-Parsing-Overhaul","pushedAt":"2024-04-23T08:19:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Introduced checkpoint gather-rules, graphing scripts, and redesigned VEP query system","shortMessageHtmlLink":"Introduced checkpoint gather-rules, graphing scripts, and redesigned …"}},{"before":"6b3f4656393bb6ba794c1cf3abae146994a7f820","after":"d4b094de94fabfd926fbc84daa8671f32eed8568","ref":"refs/heads/user/mholborn_OLD","pushedAt":"2024-03-12T09:11:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"MeganHolborn","name":"Megan Holborn","path":"/MeganHolborn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/80751008?s=80&v=4"},"commit":{"message":"Update Snakefile - revert back to old version","shortMessageHtmlLink":"Update Snakefile - revert back to old version"}},{"before":null,"after":"0431136d9b04621452498b7da679aee55989877d","ref":"refs/heads/VEP-Parsing-Overhaul","pushedAt":"2024-02-17T14:08:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Tracking initial branch work init","shortMessageHtmlLink":"Tracking initial branch work init"}},{"before":"90f08262098c7f46242d932bc95534abaebd6f66","after":"84634593f1ee6fd7c26e111e5909221512d3e0e5","ref":"refs/heads/main","pushedAt":"2024-02-17T14:06:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Refactored results directories for tmp dir","shortMessageHtmlLink":"Refactored results directories for tmp dir"}},{"before":"d01c05ab575f31ad33571c5ed41c0abc1c5451a6","after":"90f08262098c7f46242d932bc95534abaebd6f66","ref":"refs/heads/main","pushedAt":"2024-02-17T14:04:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Added rule comileSexAnnotations","shortMessageHtmlLink":"Added rule comileSexAnnotations"}},{"before":"1ad4281d2a4ff3a36814a6f8fad56b68e608b9cb","after":"d01c05ab575f31ad33571c5ed41c0abc1c5451a6","ref":"refs/heads/main","pushedAt":"2024-02-17T14:03:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Included sample-sex information and debugging","shortMessageHtmlLink":"Included sample-sex information and debugging"}},{"before":"e7611c816a6c9fc50d29adb33e91fc2ed2ed7c0e","after":"1ad4281d2a4ff3a36814a6f8fad56b68e608b9cb","ref":"refs/heads/main","pushedAt":"2024-02-17T11:26:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Split the reportFreq rule into one-rule--one-command","shortMessageHtmlLink":"Split the reportFreq rule into one-rule--one-command"}},{"before":"f89e7dbc04b8a6a0a83546a04c437530d3d90160","after":"e7611c816a6c9fc50d29adb33e91fc2ed2ed7c0e","ref":"refs/heads/main","pushedAt":"2024-02-17T10:28:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"2023 work backup","shortMessageHtmlLink":"2023 work backup"}},{"before":"21311a391386a18693e5e8294e19a9676daa145d","after":"f89e7dbc04b8a6a0a83546a04c437530d3d90160","ref":"refs/heads/main","pushedAt":"2023-11-29T12:35:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Testing Docs fix for diagrams on tablet","shortMessageHtmlLink":"Testing Docs fix for diagrams on tablet"}},{"before":"e42316ba669d29febe0fcf5471ffd6bd27bb0d86","after":"21311a391386a18693e5e8294e19a9676daa145d","ref":"refs/heads/main","pushedAt":"2023-11-29T07:57:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated MermaidJS version","shortMessageHtmlLink":"Updated MermaidJS version"}},{"before":"d1c488c668171e57b32d24971a76ae912d781ed5","after":"e42316ba669d29febe0fcf5471ffd6bd27bb0d86","ref":"refs/heads/main","pushedAt":"2023-10-11T05:24:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated docs to reflect new annotation step","shortMessageHtmlLink":"Updated docs to reflect new annotation step"}},{"before":"f35bf32e52a4a6325213f1200097fc96426565a1","after":"d1c488c668171e57b32d24971a76ae912d781ed5","ref":"refs/heads/main","pushedAt":"2023-10-11T05:22:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated docs to reflect new annotation step","shortMessageHtmlLink":"Updated docs to reflect new annotation step"}},{"before":"ddf5c926f685cf6c3d5f0263ad0c3b76aeccc8e3","after":"f35bf32e52a4a6325213f1200097fc96426565a1","ref":"refs/heads/main","pushedAt":"2023-10-10T10:23:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Corrected typo","shortMessageHtmlLink":"Corrected typo"}},{"before":"4aff77848fd30eb8bd4b75a787e339d85d02b88b","after":"ddf5c926f685cf6c3d5f0263ad0c3b76aeccc8e3","ref":"refs/heads/main","pushedAt":"2023-10-10T10:12:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated Analysis page tags and renamed page for clarity","shortMessageHtmlLink":"Updated Analysis page tags and renamed page for clarity"}},{"before":"7143dc216691f8121b967491ca963977d8494b5f","after":"4aff77848fd30eb8bd4b75a787e339d85d02b88b","ref":"refs/heads/main","pushedAt":"2023-10-10T10:08:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated and corrected collaborator table","shortMessageHtmlLink":"Updated and corrected collaborator table"}},{"before":"bae06787c48e443aafe6671981da1dee14c9b4ad","after":"7143dc216691f8121b967491ca963977d8494b5f","ref":"refs/heads/main","pushedAt":"2023-10-10T10:00:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated complex routines (Merge and Liftover)","shortMessageHtmlLink":"Updated complex routines (Merge and Liftover)"}},{"before":"9b6ede3a1d3106e6c635311d784a4b59c43879d1","after":"bae06787c48e443aafe6671981da1dee14c9b4ad","ref":"refs/heads/main","pushedAt":"2023-10-10T08:49:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated new analysis methodology for annotation","shortMessageHtmlLink":"Updated new analysis methodology for annotation"}},{"before":"0a1ec9283a98ab821b8166d8123af00cb67f67d3","after":"9b6ede3a1d3106e6c635311d784a4b59c43879d1","ref":"refs/heads/main","pushedAt":"2023-10-10T06:25:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Cleaned up formatting errors","shortMessageHtmlLink":"Cleaned up formatting errors"}},{"before":"ec92835fec70dcfc3eeb636b1cb3bb27e1af7ef2","after":"0a1ec9283a98ab821b8166d8123af00cb67f67d3","ref":"refs/heads/main","pushedAt":"2023-10-10T06:21:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Removed element","shortMessageHtmlLink":"Removed </hr> element"}},{"before":"c05aa45b85fcb96cc381a5f4649df8aaefa55ac8","after":"ec92835fec70dcfc3eeb636b1cb3bb27e1af7ef2","ref":"refs/heads/main","pushedAt":"2023-10-10T06:19:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated and simplified per-rule parameter syntax","shortMessageHtmlLink":"Updated and simplified per-rule parameter syntax"}},{"before":"f0990629c2a11cdb6f3dc2b151349678eaabf8da","after":"c05aa45b85fcb96cc381a5f4649df8aaefa55ac8","ref":"refs/heads/main","pushedAt":"2023-10-09T22:14:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated rule information","shortMessageHtmlLink":"Updated rule information"}},{"before":"bd2ee6856ce682b2680d78f03917a7698a52ffe5","after":"f0990629c2a11cdb6f3dc2b151349678eaabf8da","ref":"refs/heads/main","pushedAt":"2023-10-09T21:41:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated rule information","shortMessageHtmlLink":"Updated rule information"}},{"before":"e53d2f071f07e4eac88a2812d9d036654a10e81a","after":"bd2ee6856ce682b2680d78f03917a7698a52ffe5","ref":"refs/heads/main","pushedAt":"2023-10-09T16:31:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated rule order","shortMessageHtmlLink":"Updated rule order"}},{"before":"766844cab249e8a11298ae9a6bf116f6cd5c9662","after":"e53d2f071f07e4eac88a2812d9d036654a10e81a","ref":"refs/heads/main","pushedAt":"2023-10-09T16:27:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated rule order","shortMessageHtmlLink":"Updated rule order"}},{"before":"3b0cc5c35b8bbc814b59112d3266f30bdf2722e7","after":"766844cab249e8a11298ae9a6bf116f6cd5c9662","ref":"refs/heads/main","pushedAt":"2023-10-09T14:23:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Updated documentation","shortMessageHtmlLink":"Updated documentation"}},{"before":"117b000c33a5b136b6f89858a52e8f16784c6de9","after":null,"ref":"refs/heads/dependabot/pip/pandas-2.0.3","pushedAt":"2023-08-30T14:05:02.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"04a325dd58297e4200b52abc9e4151b7c3278272","ref":"refs/heads/dependabot/pip/pandas-2.1.0","pushedAt":"2023-08-30T14:04:55.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"pip-compile(deps): bump pandas from 2.0.0 to 2.1.0\n\nBumps [pandas](https://github.com/pandas-dev/pandas) from 2.0.0 to 2.1.0.\n- [Release notes](https://github.com/pandas-dev/pandas/releases)\n- [Commits](https://github.com/pandas-dev/pandas/compare/v2.0.0...v2.1.0)\n\n---\nupdated-dependencies:\n- dependency-name: pandas\n dependency-type: direct:production\n update-type: version-update:semver-minor\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"pip-compile(deps): bump pandas from 2.0.0 to 2.1.0"}},{"before":"fef54d4b66f1777fdc2f2a6c8b19bd274fae9655","after":"3b0cc5c35b8bbc814b59112d3266f30bdf2722e7","ref":"refs/heads/main","pushedAt":"2023-08-17T18:30:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Corrected IBD calculation step in pipeline DAG","shortMessageHtmlLink":"Corrected IBD calculation step in pipeline DAG"}},{"before":"4d25d3eebba0a4fb05f39d2c189896a238ec8e69","after":"fef54d4b66f1777fdc2f2a6c8b19bd274fae9655","ref":"refs/heads/main","pushedAt":"2023-08-15T14:38:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"G-kodes","name":"Graeme Ford","path":"/G-kodes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25722914?s=80&v=4"},"commit":{"message":"Removed hardcoded platform-specific envvars declaration","shortMessageHtmlLink":"Removed hardcoded platform-specific envvars declaration"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0wOFQxMzo0NzowNi4wMDAwMDBazwAAAASVTyHI","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0wOFQxMzo0NzowNi4wMDAwMDBazwAAAASVTyHI","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wOC0xNVQxNDozODo0OS4wMDAwMDBazwAAAANrIwO9"}},"title":"Activity · Tuks-ICMM/Pharmacogenetic-Analysis-Pipeline"}