From 755cad45582e5bcc9ece233f1e01b4b002bedbe9 Mon Sep 17 00:00:00 2001
From: Anant Thazhemadam <anant.thazhemadam@gmail.com>
Date: Mon, 29 Apr 2024 19:21:38 +0530
Subject: [PATCH 1/4] ci: update the invalidations workflow to use the
 centralised reusable workflow

---
 .github/workflows/Invalidations.yml | 33 ++++-------------------------
 1 file changed, 4 insertions(+), 29 deletions(-)

diff --git a/.github/workflows/Invalidations.yml b/.github/workflows/Invalidations.yml
index 7ed999080..34eb7a92a 100644
--- a/.github/workflows/Invalidations.yml
+++ b/.github/workflows/Invalidations.yml
@@ -1,4 +1,4 @@
-name: Invalidations
+name: "Invalidations"
 
 on:
   pull_request:
@@ -10,31 +10,6 @@ concurrency:
   cancel-in-progress: true
 
 jobs:
-  evaluate:
-    # Only run on PRs to the default branch.
-    # In the PR trigger above branches can be specified only explicitly whereas this check should work for master, main, or any other default branch
-    if: github.base_ref == github.event.repository.default_branch
-    runs-on: ubuntu-latest
-    steps:
-      - uses: julia-actions/setup-julia@v2
-        with:
-          version: "1"
-      - uses: actions/checkout@v4
-      - uses: julia-actions/julia-buildpkg@v1
-      - uses: julia-actions/julia-invalidations@v1
-        id: invs_pr
-
-      - uses: actions/checkout@v4
-        with:
-          ref: ${{ github.event.repository.default_branch }}
-      - uses: julia-actions/julia-buildpkg@v1
-      - uses: julia-actions/julia-invalidations@v1
-        id: invs_default
-
-      - name: Report invalidation counts
-        run: |
-          echo "Invalidations on default branch: ${{ steps.invs_default.outputs.total }} (${{ steps.invs_default.outputs.deps }} via deps)" >> $GITHUB_STEP_SUMMARY
-          echo "This branch: ${{ steps.invs_pr.outputs.total }} (${{ steps.invs_pr.outputs.deps }} via deps)" >> $GITHUB_STEP_SUMMARY
-      - name: Check if the PR does increase number of invalidations
-        if: steps.invs_pr.outputs.total > steps.invs_default.outputs.total
-        run: exit 1
+  evaluate-invalidations:
+    name: "Evaluate Invalidations"
+    uses: "SciML/.github/.github/workflows/invalidations.yml@v1"

From 8e1e1738ade7d908862f108ca80382cb3db3d39c Mon Sep 17 00:00:00 2001
From: Anant Thazhemadam <anant.thazhemadam@gmail.com>
Date: Mon, 29 Apr 2024 19:38:37 +0530
Subject: [PATCH 2/4] ci: update the format check workflow to use the
 centralised reusable workflow

---
 .github/workflows/FormatCheck.yml | 37 ++++---------------------------
 1 file changed, 4 insertions(+), 33 deletions(-)

diff --git a/.github/workflows/FormatCheck.yml b/.github/workflows/FormatCheck.yml
index dd551501c..c240796cc 100644
--- a/.github/workflows/FormatCheck.yml
+++ b/.github/workflows/FormatCheck.yml
@@ -1,42 +1,13 @@
-name: format-check
+name: "Format Check"
 
 on:
   push:
     branches:
       - 'master'
-      - 'release-'
     tags: '*'
   pull_request:
 
 jobs:
-  build:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      matrix:
-        julia-version: [1]
-        julia-arch: [x86]
-        os: [ubuntu-latest]
-    steps:
-      - uses: julia-actions/setup-julia@latest
-        with:
-          version: ${{ matrix.julia-version }}
-
-      - uses: actions/checkout@v4
-      - name: Install JuliaFormatter and format
-        # This will use the latest version by default but you can set the version like so:
-        #
-        # julia  -e 'using Pkg; Pkg.add(PackageSpec(name="JuliaFormatter", version="0.13.0"))'
-        run: |
-          julia  -e 'using Pkg; Pkg.add(PackageSpec(name="JuliaFormatter"))'
-          julia  -e 'using JuliaFormatter; format(".", verbose=true)'
-      - name: Format check
-        run: |
-          julia -e '
-          out = Cmd(`git diff --name-only`) |> read |> String
-          if out == ""
-              exit(0)
-          else
-              @error "Some files have not been formatted !!!"
-              write(stdout, out)
-              exit(1)
-          end'
+  format-check:
+    name: "Format Check"
+    uses: "SciML/.github/.github/workflows/format-check.yml@v1"

From 8d6d364403b4ee0872dea76c1e15c6b3e52cbdff Mon Sep 17 00:00:00 2001
From: Anant Thazhemadam <anant.thazhemadam@gmail.com>
Date: Thu, 1 Aug 2024 00:33:01 +0200
Subject: [PATCH 3/4] ci: update tests workflow to use centralised reusable
 workflow

---
 .github/workflows/CI.yml    | 60 -------------------------------------
 .github/workflows/Tests.yml | 43 ++++++++++++++++++++++++++
 2 files changed, 43 insertions(+), 60 deletions(-)
 delete mode 100644 .github/workflows/CI.yml
 create mode 100644 .github/workflows/Tests.yml

diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
deleted file mode 100644
index b6e32f7d6..000000000
--- a/.github/workflows/CI.yml
+++ /dev/null
@@ -1,60 +0,0 @@
-name: CI
-on:
-  pull_request:
-    branches:
-      - master
-    paths-ignore:
-      - "docs/**"
-  push:
-    branches:
-      - master
-    paths-ignore:
-      - "docs/**"
-jobs:
-  test:
-    runs-on: ubuntu-latest
-    strategy:
-      fail-fast: false
-      matrix:
-        group:
-          - QA
-          - ODEBPINN
-          - PDEBPINN
-          - NNPDE1
-          - NNPDE2
-          - AdaptiveLoss
-          - Logging
-          - Forward
-          - DGM
-          - NNODE
-          - NeuralAdapter
-          - IntegroDiff
-        version:
-          - "1"
-    steps:
-      - uses: actions/checkout@v4
-      - uses: julia-actions/setup-julia@v2
-        with:
-          version: ${{ matrix.version }}
-      - uses: actions/cache@v4
-        env:
-          cache-name: cache-artifacts
-        with:
-          path: ~/.julia/artifacts
-          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-test-${{ env.cache-name }}-
-            ${{ runner.os }}-test-
-            ${{ runner.os }}-
-      - uses: julia-actions/julia-buildpkg@v1
-      - uses: julia-actions/julia-runtest@v1
-        env:
-          GROUP: ${{ matrix.group }}
-      - uses: julia-actions/julia-processcoverage@v1
-        with:
-          directories: src,lib/NeuralPDELogging/src
-      - uses: codecov/codecov-action@v4
-        with:
-          files: lcov.info
-          token: ${{ secrets.CODECOV_TOKEN }}
-          fail_ci_if_error: true
diff --git a/.github/workflows/Tests.yml b/.github/workflows/Tests.yml
new file mode 100644
index 000000000..a290993f2
--- /dev/null
+++ b/.github/workflows/Tests.yml
@@ -0,0 +1,43 @@
+name: "Tests"
+
+on:
+  pull_request:
+    branches:
+      - master
+      - 'release-'
+    paths-ignore:
+      - 'docs/**'
+  push:
+    branches:
+      - master
+    paths-ignore:
+      - 'docs/**'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ github.ref_name != github.event.repository.default_branch || github.ref != 'refs/tags/v*' }}
+
+jobs:
+  tests:
+    name: "Tests"
+    strategy:
+      fail-fast: false
+      matrix:
+        group:
+          - "QA"
+          - "ODEBPINN"
+          - "PDEBPINN"
+          - "NNPDE1"
+          - "NNPDE2"
+          - "AdaptiveLoss"
+          - "Logging"
+          - "Forward"
+          - "DGM"
+          - "NNODE"
+          - "NeuralAdapter"
+          - "IntegroDiff"
+    uses: "SciML/.github/.github/workflows/tests.yml@v1"
+    with:
+      group: "${{ matrix.group }}"
+      coverage-directories: "src,lib/NeuralPDELogging/src"
+    secrets: "inherit"

From 4cb392f50bc268c89d6ce9361eba5c2a7305d0a6 Mon Sep 17 00:00:00 2001
From: Anant Thazhemadam <anant.thazhemadam@gmail.com>
Date: Thu, 1 Aug 2024 00:33:15 +0200
Subject: [PATCH 4/4] ci(format-check): automatically comment formatting
 suggestions on PRs

---
 .github/workflows/FormatCheck.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/FormatCheck.yml b/.github/workflows/FormatCheck.yml
index c240796cc..6185015c4 100644
--- a/.github/workflows/FormatCheck.yml
+++ b/.github/workflows/FormatCheck.yml
@@ -10,4 +10,4 @@ on:
 jobs:
   format-check:
     name: "Format Check"
-    uses: "SciML/.github/.github/workflows/format-check.yml@v1"
+    uses: "SciML/.github/.github/workflows/format-suggestions-on-pr.yml@v1"