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CaseSearch.py
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CaseSearch.py
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# -*- coding: UTF-8 -*-
# -------------------------------------------------------------------------------
# Name: CaseSearch
# Purpose: search case by drug or pt in all data.
#
# Author: Phate
#
# Created: 2015/3/10
# Copyright: (c) Phate 2015
# Licence: <your licence>
# -------------------------------------------------------------------------------
import pyodbc
connect_information = "Trusted_Connection=yes;driver={SQL Server};server=localhost"
AGE_TYPE = ["~5", "18~60", "60~"]
GENDER_TYPE = ["Male", "Female"]
LOG_DIR = "D:\\log\\"
def do(in_drug, in_pts, in_ages=None, in_genders=None):
output = {}
count = 0
with pyodbc.connect(connect_information, database="RSADRs") as con:
cursor = con.cursor()
rows = cursor.execute("SELECT season,age,gender,drug,PT FROM totalFAERS")
for season, age, gender, drug, PT in rows: # list all data.
target_season = output.setdefault(season, [0, 0, 0, 0])
count += 1
print(str(count)+"\r"),
if in_ages is not None and age not in in_ages:
continue
if in_genders is not None and gender == in_genders:
continue
case_drug = drug.split(",")
case_pt = PT.split(",")
flag_d = False
flag_p = False
for d in in_drug:
if d.upper() in case_drug:
flag_d = True
for p in in_pts:
if p.upper() in case_pt:
flag_p = True
# classify this cass in 2*2 contingency table
if flag_d:
if flag_p: # A
target_season[0] += 1
else: # B
target_season[1] += 1
else:
if flag_p: # C
target_season[2] += 1
else: # D
target_season[3] += 1
cursor.close()
seasons = output.keys()
seasons.sort()
with open("%ssearch\\%s_%s.txt" % (LOG_DIR, "&".join(in_drug), "&".join(in_pts)), "w") as output_file:
for s in seasons:
output_file.write(s)
for i in range(4):
output_file.write("\t%d" % output[s][i])
output_file.write("\n")
def main():
pass
if __name__ == "__main__":
main()