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DESCRIPTION
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DESCRIPTION
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Package: FastReseg
Title: Detection and Correction of Cell Segmentation Error Based on Spatial Profile of Transcripts
Version: 1.0.0
Authors@R: c(
person(given = "Patrick", family = "Danaher", email = "pdanaher@nanostring.com", role = c("aut"), comment = c(ORCID = "0000-0002-2844-5883")),
person(given = "Lidan", family = "Wu", email = "lwu@nanostring.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-3150-6170"))
)
Description: An R package for detection and correction of cell segmentation error based on spatial profile of transcripts
URL: https://nanostring-biostats.github.io/FastReseg/,
https://github.com/Nanostring-Biostats/FastReseg
BugReports: https://github.com/Nanostring-Biostats/FastReseg/issues
License: file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Additional_repositories:
https://github.com/drieslab/GiottoClass,
https://github.com/drieslab/Giotto
Depends:
R (>= 3.5.0)
Imports:
lmtest,
MASS,
Matrix,
stats,
methods,
utils,
e1071,
igraph (>= 1.2.4.1),
spatstat.geom,
dbscan (>= 1.1-3),
dplyr,
concaveman,
data.table,
reshape2,
ggplot2,
fs,
stringr,
GiottoClass(>= 0.2.3),
geometry(>= 0.4.6.1),
parallel
Suggests:
testthat (>= 3.0.0),
kableExtra,
knitr,
rmarkdown,
RTriangle (>= 1.6-0.10),
deldir (>= 1.0.6),
Giotto
Config/testthat/edition: 3
VignetteBuilder: knitr