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reactions.json
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reactions.json
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{
"inorganic_reactions":[
{
"type": "remineralization",
"consumed": "dom1",
"produced": "DIC",
"parameters": {
}
},
{
"type": "remineralization",
"consumed": "pom1",
"produced": "DIC",
"parameters": {
}
},
{
"type": "air-sea flux",
"consumed": "DIC",
"produced": "DIC",
"parameters": {
}
},
{
"type": "denitrtification",
"consumed": ["NO3","S"],
"produced": "N2",
"parameters": {
}
},
{
"type": "remineralization",
"consumed": "dom1",
"produced": "NH4",
"parameters": {
}
},
{
"type": "remineralization",
"consumed": "pom1",
"produced": "NH4",
"parameters": {
}
},
{
"type": "nitrification",
"consumed": ["NH4","O2"],
"produced": "NO3",
"parameters": {
}
},
{
"type": "air-sea flux",
"consumed": "O2",
"produced": "O2",
"parameters": {
}
},
{
"type": "remineralization",
"consumed": ["dom1","O2"],
"produced": "",
"parameters": {
}
},
{
"type": "remineralization",
"consumed": ["pom1","O2"],
"produced": "",
"parameters": {
}
},
{
"type": "remineralization",
"consumed": "dom1",
"produced": "PO4",
"parameters": {
}
},
{
"type": "remineralization",
"consumed": "pom1",
"produced": "PO4",
"parameters": {
}
},
{
"type": "reoxidation",
"consumed": ["O2","S"],
"produced": "",
"parameters": {
}
},
{
"type": "remineralization",
"consumed": "pom1",
"produced": "SiO2",
"parameters": {
}
}
],
"bac1_reactions":[
{
"type": "lysis",
"consumed": "bac1",
"produced": "dom1",
"parameters": {
"dens_mort_rate": 0.0,
"spec_mort_rate": 0.1,
"dom_excr_frac_c": 0.6,
"dom_excr_frac_n": 0.72,
"dom_excr_frac_p": 0.832
}
},
{
"type": "uptake",
"consumed": "dom1",
"produced": "bac1",
"parameters": {
}
},
{
"type": "release",
"consumed": "bac1",
"produced": "dom2",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "dom2",
"produced": "bac1",
"parameters": {
}
},
{
"type": "release",
"consumed": "bac1",
"produced": "dom3",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "dom3",
"produced": "bac1",
"parameters": {
}
},
{
"type": "lysis",
"consumed": "bac1",
"produced": "pom1",
"parameters": {
"dens_mort_rate": 0.0,
"spec_mort_rate": 0.1,
"dom_excr_frac_c": 0.6,
"dom_excr_frac_n": 0.72,
"dom_excr_frac_p": 0.832
}
},
{
"type": "uptake",
"consumed": "pom1",
"produced": "bac1",
"parameters": {
}
},
{
"type": "respiration",
"consumed": ["bac1","O2"],
"produced": ["DIC","HS"],
"parameters": {
"spec_resp_rate": 0.01,
"anoxic_resp_frac": 0.2,
"activity_resp_frac": 0.6
}
},
{
"type": "release",
"consumed": "bac1",
"produced": "NH4",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "NH4",
"produced": "bac1",
"parameters": {
}
},
{
"type": "release",
"consumed": "bac1",
"produced": "PO4",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "PO4",
"produced": "bac1",
"parameters": {
}
}
],
"phyto1_reactions":[
{
"type": "lysis",
"consumed": "phyto1",
"produced": "dom1",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "dom1",
"produced": "phyto1",
"parameters": {
}
},
{
"type": "exudation",
"consumed": "phyto1",
"produced": "dom2",
"parameters": {
}
},
{
"type": "lysis",
"consumed": "phyto1",
"produced": "pom1",
"parameters": {
}
},
{
"type": "chlorophyll synthesis",
"consumed": "phyto1",
"produced": "phyto1",
"parameters": {
}
},
{
"type": "primary production",
"consumed": "DIC",
"produced": ["phyto1","O2"],
"parameters": {
}
},
{
"type": "respiration",
"consumed": ["phyto1","O2"],
"produced": "DIC",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "Fe",
"produced": "phyto1",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "NH4",
"produced": "phyto1",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "NO3",
"produced": "phyto1",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "PO4",
"produced": "phyto1",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "SiO2",
"produced": "phyto1",
"parameters": {
}
}
],
"phyto2_reactions":[
{
"type": "lysis",
"consumed": "phyto2",
"produced": "dom1",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "dom1",
"produced": "phyto2",
"parameters": {
}
},
{
"type": "exudation",
"consumed": "phyto2",
"produced": "dom2",
"parameters": {
}
},
{
"type": "lysis",
"consumed": "phyto2",
"produced": "pom1",
"parameters": {
}
},
{
"type": "chlorophyll synthesis",
"consumed": "phyto2",
"produced": "phyto2",
"parameters": {
}
},
{
"type": "primary production",
"consumed": "DIC",
"produced": ["phyto2","O2"],
"parameters": {
}
},
{
"type": "respiration",
"consumed": ["phyto2","O2"],
"produced": "DIC",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "Fe",
"produced": "phyto2",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "NH4",
"produced": "phyto2",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "NO3",
"produced": "phyto2",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "PO4",
"produced": "phyto2",
"parameters": {
}
}
],
"phyto3_reactions":[
{
"type": "lysis",
"consumed": "phyto3",
"produced": "dom1",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "dom1",
"produced": "phyto3",
"parameters": {
}
},
{
"type": "exudation",
"consumed": "phyto3",
"produced": "dom2",
"parameters": {
}
},
{
"type": "lysis",
"consumed": "phyto3",
"produced": "pom1",
"parameters": {
}
},
{
"type": "chlorophyll synthesis",
"consumed": "phyto3",
"produced": "phyto3",
"parameters": {
}
},
{
"type": "primary production",
"consumed": "DIC",
"produced": ["phyto3","O2"],
"parameters": {
}
},
{
"type": "respiration",
"consumed": ["phyto3","O2"],
"produced": "DIC",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "Fe",
"produced": "phyto3",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "NH4",
"produced": "phyto3",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "NO3",
"produced": "phyto3",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "PO4",
"produced": "phyto3",
"parameters": {
}
}
],
"phyto4_reactions":[
{
"type": "lysis",
"consumed": "phyto4",
"produced": "dom1",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "dom1",
"produced": "phyto4",
"parameters": {
}
},
{
"type": "exudation",
"consumed": "phyto4",
"produced": "dom2",
"parameters": {
}
},
{
"type": "lysis",
"consumed": "phyto4",
"produced": "pom1",
"parameters": {
}
},
{
"type": "chlorophyll synthesis",
"consumed": "phyto4",
"produced": "phyto4",
"parameters": {
}
},
{
"type": "primary production",
"consumed": "DIC",
"produced": ["phyto4","O2"],
"parameters": {
}
},
{
"type": "respiration",
"consumed": ["phyto4","O2"],
"produced": "DIC",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "Fe",
"produced": "phyto4",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "NH4",
"produced": "phyto4",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "NO3",
"produced": "phyto4",
"parameters": {
}
},
{
"type": "uptake",
"consumed": "PO4",
"produced": "phyto4",
"parameters": {
}
}
],
"zoo1_reactions":[
{
"type": "respiration",
"consumed": ["zoo1","O2"],
"produced": "DIC",
"parameters": {
}
},
{
"type": "release",
"consumed": "zoo1",
"produced": "dom1",
"parameters": {
}
},
{
"type": "release",
"consumed": "zoo1",
"produced": "pom1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto1",
"produced": "zoo1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto2",
"produced": "zoo1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto3",
"produced": "zoo1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto4",
"produced": "zoo1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "zoo2",
"produced": "zoo1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "zoo3",
"produced": "zoo1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "zoo4",
"produced": "zoo1",
"parameters": {
}
}
],
"zoo2_reactions":[
{
"type": "respiration",
"consumed": ["zoo2","O2"],
"produced": "DIC",
"parameters": {
}
},
{
"type": "release",
"consumed": "zoo2",
"produced": "dom1",
"parameters": {
}
},
{
"type": "release",
"consumed": "zoo2",
"produced": "pom1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto1",
"produced": "zoo2",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto2",
"produced": "zoo2",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto3",
"produced": "zoo2",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto4",
"produced": "zoo2",
"parameters": {
}
},
{
"type": "predation",
"consumed": "zoo1",
"produced": "zoo2",
"parameters": {
}
},
{
"type": "predation",
"consumed": "zoo3",
"produced": "zoo2",
"parameters": {
}
},
{
"type": "predation",
"consumed": "zoo4",
"produced": "zoo2",
"parameters": {
}
}
],
"zoo3_reactions":[
{
"type": "respiration",
"consumed": ["zoo3","O2"],
"produced": "DIC",
"parameters": {
}
},
{
"type": "release",
"consumed": "zoo3",
"produced": "dom1",
"parameters": {
}
},
{
"type": "release",
"consumed": "zoo3",
"produced": "pom1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "bac1",
"produced": "zoo3",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto1",
"produced": "zoo3",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto2",
"produced": "zoo3",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto3",
"produced": "zoo3",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto4",
"produced": "zoo3",
"parameters": {
}
},
{
"type": "predation",
"consumed": "zoo4",
"produced": "zoo3",
"parameters": {
}
}
],
"zoo4_reactions":[
{
"type": "respiration",
"consumed": ["zoo4","O2"],
"produced": "DIC",
"parameters": {
}
},
{
"type": "release",
"consumed": "zoo4",
"produced": "dom1",
"parameters": {
}
},
{
"type": "release",
"consumed": "zoo4",
"produced": "pom1",
"parameters": {
}
},
{
"type": "predation",
"consumed": "bac1",
"produced": "zoo4",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto1",
"produced": "zoo4",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto2",
"produced": "zoo4",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto3",
"produced": "zoo4",
"parameters": {
}
},
{
"type": "predation",
"consumed": "phyto4",
"produced": "zoo4",
"parameters": {
}
},
{
"type": "predation",
"consumed": "zoo3",
"produced": "zoo4",
"parameters": {
}
}
],
"format":[
{
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"produced": "",
"parameters": {
}
}
]
}