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configure.ac
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configure.ac
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dnl Process this file with autoconf to produce a configure script.
AC_PREREQ([2.69])
AC_INIT([MSGseqTK],[1.2.3])
AC_CANONICAL_TARGET
AC_CANONICAL_HOST
AC_C_INLINE
AC_TYPE_SIZE_T
AC_TYPE_INT8_T
AC_TYPE_UINT8_T
AC_TYPE_UINT16_T
AC_TYPE_UINT32_T
AC_TYPE_INT32_T
AC_TYPE_INT64_T
AC_TYPE_UINT64_T
LT_INIT
AC_PROG_RANLIB
AC_CHECK_HEADERS
AC_CHECK_HEADER_STDBOOL
AM_INIT_AUTOMAKE
AC_LANG(C++)
AC_PROG_CXX
AC_PROG_AWK
AC_PROG_CC
AC_PROG_CPP
AC_PROG_INSTALL
AC_PROG_LN_S
AC_PROG_MAKE_SET
AC_CONFIG_MACRO_DIR([m4])
AX_CXX_COMPILE_STDCXX(11)
AC_CHECK_FUNCS([sqrt isnan floor])
AC_CHECK_FUNCS([strerror] [pow])
AX_CHECK_ZLIB()
AX_BOOST_BASE([1.50.0])
AX_BOOST_IOSTREAMS()
#AX_BOOST_REGEX()
AX_WITH_HTSLIB
AC_CONFIG_FILES([Makefile
src/Makefile
test/Makefile])
AC_CONFIG_SUBDIRS([src/libdivsufsort
src/util
src/SAMtools
src/math
src/libsds])
AC_SUBST(LIBDIVSUFSORT_PKG_NAME, libdivsufsort)
AC_OPENMP
AC_OUTPUT