tests/utils/uml_data_processing.svg

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cluster logging--><polygon fill="#FFFFFF" filter="url(#f1rngaptnu42c4)" points="3798.5,1414,3862.5,1414,3869.5,1436.2969,3926.5,1436.2969,3926.5,1497,3798.5,1497,3798.5,1414" style="stroke: #000000; stroke-width: 1.5;"/><line style="stroke: #000000; stroke-width: 1.5;" x1="3798.5" x2="3869.5" y1="1436.2969" y2="1436.2969"/><text fill="#000000" font-family="sans-serif" font-size="14" font-weight="bold" lengthAdjust="spacingAndGlyphs" textLength="58" x="3802.5" y="1428.9951">logging</text><!--MD5=[649df52b41ea0d059d13fd2f1b4ce0c8]
cluster np--><polygon fill="#FFFFFF" filter="url(#f1rngaptnu42c4)" points="3835.5,2170,3861.5,2170,3868.5,2192.2969,5259.5,2192.2969,5259.5,2253,3835.5,2253,3835.5,2170" style="stroke: #000000; stroke-width: 1.5;"/><line style="stroke: #000000; stroke-width: 1.5;" x1="3835.5" x2="3868.5" y1="2192.2969" y2="2192.2969"/><text fill="#000000" font-family="sans-serif" font-size="14" font-weight="bold" lengthAdjust="spacingAndGlyphs" textLength="20" x="3839.5" y="2184.9951">np</text><!--MD5=[f0d3ce606cb8a4ed89a9121ac867a06e]
cluster pdb2sql--><polygon fill="#FFFFFF" filter="url(#f1rngaptnu42c4)" points="5303.5,1414,5372.5,1414,5379.5,1436.2969,5423.5,1436.2969,5423.5,1497,5303.5,1497,5303.5,1414" style="stroke: #000000; stroke-width: 1.5;"/><line style="stroke: #000000; stroke-width: 1.5;" x1="5303.5" x2="5379.5" y1="1436.2969" y2="1436.2969"/><text fill="#000000" font-family="sans-serif" font-size="14" font-weight="bold" lengthAdjust="spacingAndGlyphs" textLength="63" x="5307.5" y="1428.9951">pdb2sql</text><!--MD5=[9d1c6b68314a662b8527f42dc84b0a80]
cluster freesasa--><polygon fill="#FFFFFF" filter="url(#f1rngaptnu42c4)" points="6031.5,1414,6106.5,1414,6113.5,1436.2969,6381.5,1436.2969,6381.5,1497,6031.5,1497,6031.5,1414" style="stroke: #000000; stroke-width: 1.5;"/><line style="stroke: #000000; stroke-width: 1.5;" x1="6031.5" x2="6113.5" y1="1436.2969" y2="1436.2969"/><text fill="#000000" font-family="sans-serif" font-size="14" font-weight="bold" lengthAdjust="spacingAndGlyphs" textLength="69" x="6035.5" y="1428.9951">freesasa</text><!--MD5=[4a64090555417878edb51fc3e4efca47]
cluster glob--><polygon fill="#FFFFFF" filter="url(#f1rngaptnu42c4)" points="6078.5,2170,6118.5,2170,6125.5,2192.2969,6170.5,2192.2969,6170.5,2253,6078.5,2253,6078.5,2170" style="stroke: #000000; stroke-width: 1.5;"/><line style="stroke: #000000; stroke-width: 1.5;" x1="6078.5" x2="6125.5" y1="2192.2969" y2="2192.2969"/><text fill="#000000" font-family="sans-serif" font-size="14" font-weight="bold" lengthAdjust="spacingAndGlyphs" textLength="34" x="6082.5" y="2184.9951">glob</text><!--MD5=[e70268632610cd6ca0629412dd3aca02]
cluster h5py--><polygon fill="#FFFFFF" filter="url(#f1rngaptnu42c4)" points="6194.5,2170,6239.5,2170,6246.5,2192.2969,6280.5,2192.2969,6280.5,2253,6194.5,2253,6194.5,2170" style="stroke: #000000; stroke-width: 1.5;"/><line style="stroke: #000000; stroke-width: 1.5;" x1="6194.5" x2="6246.5" y1="2192.2969" y2="2192.2969"/><text fill="#000000" font-family="sans-serif" font-size="14" font-weight="bold" lengthAdjust="spacingAndGlyphs" textLength="39" x="6198.5" y="2184.9951">h5py</text><!--MD5=[16e8e708cb2ff63d665a6623c36eb742]
class logging.getLogger--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="logging.getLogger" style="stroke: #A80036; stroke-width: 1.5;" width="96" x="3814.5" y="1449"/><ellipse cx="3829.5" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3832.4688,1470.6406 Q3831.8906,1470.9375 3831.25,1471.0781 Q3830.6094,1471.2344 3829.9063,1471.2344 Q3827.4063,1471.2344 3826.0781,1469.5938 Q3824.7656,1467.9375 3824.7656,1464.8125 Q3824.7656,1461.6875 3826.0781,1460.0313 Q3827.4063,1458.375 3829.9063,1458.375 Q3830.6094,1458.375 3831.25,1458.5313 Q3831.9063,1458.6875 3832.4688,1458.9844 L3832.4688,1461.7031 Q3831.8438,1461.125 3831.25,1460.8594 Q3830.6563,1460.5781 3830.0313,1460.5781 Q3828.6875,1460.5781 3828,1461.6563 Q3827.3125,1462.7188 3827.3125,1464.8125 Q3827.3125,1466.9063 3828,1467.9844 Q3828.6875,1469.0469 3830.0313,1469.0469 Q3830.6563,1469.0469 3831.25,1468.7813 Q3831.8438,1468.5 3832.4688,1467.9219 L3832.4688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="64" x="3843.5" y="1469.1543">getLogger</text><!--MD5=[590fa2a4a1b6b211d308ff64182fd018]
class np.zeros--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.zeros" style="stroke: #A80036; stroke-width: 1.5;" width="65" x="5069" y="2205"/><ellipse cx="5084" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5086.9688,2226.6406 Q5086.3906,2226.9375 5085.75,2227.0781 Q5085.1094,2227.2344 5084.4063,2227.2344 Q5081.9063,2227.2344 5080.5781,2225.5938 Q5079.2656,2223.9375 5079.2656,2220.8125 Q5079.2656,2217.6875 5080.5781,2216.0313 Q5081.9063,2214.375 5084.4063,2214.375 Q5085.1094,2214.375 5085.75,2214.5313 Q5086.4063,2214.6875 5086.9688,2214.9844 L5086.9688,2217.7031 Q5086.3438,2217.125 5085.75,2216.8594 Q5085.1563,2216.5781 5084.5313,2216.5781 Q5083.1875,2216.5781 5082.5,2217.6563 Q5081.8125,2218.7188 5081.8125,2220.8125 Q5081.8125,2222.9063 5082.5,2223.9844 Q5083.1875,2225.0469 5084.5313,2225.0469 Q5085.1563,2225.0469 5085.75,2224.7813 Q5086.3438,2224.5 5086.9688,2223.9219 L5086.9688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="33" x="5098" y="2225.1543">zeros</text><!--MD5=[91ddd2d89b3266b19a70d0ba67d05997]
class np.array--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.array" style="stroke: #A80036; stroke-width: 1.5;" width="64" x="4182.5" y="2205"/><ellipse cx="4197.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4200.4688,2226.6406 Q4199.8906,2226.9375 4199.25,2227.0781 Q4198.6094,2227.2344 4197.9063,2227.2344 Q4195.4063,2227.2344 4194.0781,2225.5938 Q4192.7656,2223.9375 4192.7656,2220.8125 Q4192.7656,2217.6875 4194.0781,2216.0313 Q4195.4063,2214.375 4197.9063,2214.375 Q4198.6094,2214.375 4199.25,2214.5313 Q4199.9063,2214.6875 4200.4688,2214.9844 L4200.4688,2217.7031 Q4199.8438,2217.125 4199.25,2216.8594 Q4198.6563,2216.5781 4198.0313,2216.5781 Q4196.6875,2216.5781 4196,2217.6563 Q4195.3125,2218.7188 4195.3125,2220.8125 Q4195.3125,2222.9063 4196,2223.9844 Q4196.6875,2225.0469 4198.0313,2225.0469 Q4198.6563,2225.0469 4199.25,2224.7813 Q4199.8438,2224.5 4200.4688,2223.9219 L4200.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="32" x="4211.5" y="2225.1543">array</text><!--MD5=[5de345cfbc38ee02310b1dac28686c12]
class np.sqrt--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.sqrt" style="stroke: #A80036; stroke-width: 1.5;" width="57" x="4387" y="2205"/><ellipse cx="4402" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4404.9688,2226.6406 Q4404.3906,2226.9375 4403.75,2227.0781 Q4403.1094,2227.2344 4402.4063,2227.2344 Q4399.9063,2227.2344 4398.5781,2225.5938 Q4397.2656,2223.9375 4397.2656,2220.8125 Q4397.2656,2217.6875 4398.5781,2216.0313 Q4399.9063,2214.375 4402.4063,2214.375 Q4403.1094,2214.375 4403.75,2214.5313 Q4404.4063,2214.6875 4404.9688,2214.9844 L4404.9688,2217.7031 Q4404.3438,2217.125 4403.75,2216.8594 Q4403.1563,2216.5781 4402.5313,2216.5781 Q4401.1875,2216.5781 4400.5,2217.6563 Q4399.8125,2218.7188 4399.8125,2220.8125 Q4399.8125,2222.9063 4400.5,2223.9844 Q4401.1875,2225.0469 4402.5313,2225.0469 Q4403.1563,2225.0469 4403.75,2224.7813 Q4404.3438,2224.5 4404.9688,2223.9219 L4404.9688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="25" x="4416" y="2225.1543">sqrt</text><!--MD5=[e09a76bfbefa095685b28556145b8dbd]
class np.logical_and--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.logical_and" style="stroke: #A80036; stroke-width: 1.5;" width="102" x="4479.5" y="2205"/><ellipse cx="4494.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4497.4688,2226.6406 Q4496.8906,2226.9375 4496.25,2227.0781 Q4495.6094,2227.2344 4494.9063,2227.2344 Q4492.4063,2227.2344 4491.0781,2225.5938 Q4489.7656,2223.9375 4489.7656,2220.8125 Q4489.7656,2217.6875 4491.0781,2216.0313 Q4492.4063,2214.375 4494.9063,2214.375 Q4495.6094,2214.375 4496.25,2214.5313 Q4496.9063,2214.6875 4497.4688,2214.9844 L4497.4688,2217.7031 Q4496.8438,2217.125 4496.25,2216.8594 Q4495.6563,2216.5781 4495.0313,2216.5781 Q4493.6875,2216.5781 4493,2217.6563 Q4492.3125,2218.7188 4492.3125,2220.8125 Q4492.3125,2222.9063 4493,2223.9844 Q4493.6875,2225.0469 4495.0313,2225.0469 Q4495.6563,2225.0469 4496.25,2224.7813 Q4496.8438,2224.5 4497.4688,2223.9219 L4497.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="70" x="4508.5" y="2225.1543">logical_and</text><!--MD5=[979e21e802bf5e9b6a676827451642d0]
class np.min--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.min" style="stroke: #A80036; stroke-width: 1.5;" width="54" x="3982.5" y="2205"/><ellipse cx="3997.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4000.4688,2226.6406 Q3999.8906,2226.9375 3999.25,2227.0781 Q3998.6094,2227.2344 3997.9063,2227.2344 Q3995.4063,2227.2344 3994.0781,2225.5938 Q3992.7656,2223.9375 3992.7656,2220.8125 Q3992.7656,2217.6875 3994.0781,2216.0313 Q3995.4063,2214.375 3997.9063,2214.375 Q3998.6094,2214.375 3999.25,2214.5313 Q3999.9063,2214.6875 4000.4688,2214.9844 L4000.4688,2217.7031 Q3999.8438,2217.125 3999.25,2216.8594 Q3998.6563,2216.5781 3998.0313,2216.5781 Q3996.6875,2216.5781 3996,2217.6563 Q3995.3125,2218.7188 3995.3125,2220.8125 Q3995.3125,2222.9063 3996,2223.9844 Q3996.6875,2225.0469 3998.0313,2225.0469 Q3998.6563,2225.0469 3999.25,2224.7813 Q3999.8438,2224.5 4000.4688,2223.9219 L4000.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="22" x="4011.5" y="2225.1543">min</text><!--MD5=[21cb3929f21f6a5301a6d281ed33aef1]
class np.sum--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.sum" style="stroke: #A80036; stroke-width: 1.5;" width="58" x="4616.5" y="2205"/><ellipse cx="4631.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4634.4688,2226.6406 Q4633.8906,2226.9375 4633.25,2227.0781 Q4632.6094,2227.2344 4631.9063,2227.2344 Q4629.4063,2227.2344 4628.0781,2225.5938 Q4626.7656,2223.9375 4626.7656,2220.8125 Q4626.7656,2217.6875 4628.0781,2216.0313 Q4629.4063,2214.375 4631.9063,2214.375 Q4632.6094,2214.375 4633.25,2214.5313 Q4633.9063,2214.6875 4634.4688,2214.9844 L4634.4688,2217.7031 Q4633.8438,2217.125 4633.25,2216.8594 Q4632.6563,2216.5781 4632.0313,2216.5781 Q4630.6875,2216.5781 4630,2217.6563 Q4629.3125,2218.7188 4629.3125,2220.8125 Q4629.3125,2222.9063 4630,2223.9844 Q4630.6875,2225.0469 4632.0313,2225.0469 Q4632.6563,2225.0469 4633.25,2224.7813 Q4633.8438,2224.5 4634.4688,2223.9219 L4634.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="26" x="4645.5" y="2225.1543">sum</text><!--MD5=[00a275823c7755eb360fcc99993f4a94]
class np.loadtxt--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.loadtxt" style="stroke: #A80036; stroke-width: 1.5;" width="75" x="5169" y="2205"/><ellipse cx="5184" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5186.9688,2226.6406 Q5186.3906,2226.9375 5185.75,2227.0781 Q5185.1094,2227.2344 5184.4063,2227.2344 Q5181.9063,2227.2344 5180.5781,2225.5938 Q5179.2656,2223.9375 5179.2656,2220.8125 Q5179.2656,2217.6875 5180.5781,2216.0313 Q5181.9063,2214.375 5184.4063,2214.375 Q5185.1094,2214.375 5185.75,2214.5313 Q5186.4063,2214.6875 5186.9688,2214.9844 L5186.9688,2217.7031 Q5186.3438,2217.125 5185.75,2216.8594 Q5185.1563,2216.5781 5184.5313,2216.5781 Q5183.1875,2216.5781 5182.5,2217.6563 Q5181.8125,2218.7188 5181.8125,2220.8125 Q5181.8125,2222.9063 5182.5,2223.9844 Q5183.1875,2225.0469 5184.5313,2225.0469 Q5185.1563,2225.0469 5185.75,2224.7813 Q5186.3438,2224.5 5186.9688,2223.9219 L5186.9688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="43" x="5198" y="2225.1543">loadtxt</text><!--MD5=[349af5412a57a3c01834675e7c160624]
class np.empty--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.empty" style="stroke: #A80036; stroke-width: 1.5;" width="70" x="4281.5" y="2205"/><ellipse cx="4296.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4299.4688,2226.6406 Q4298.8906,2226.9375 4298.25,2227.0781 Q4297.6094,2227.2344 4296.9063,2227.2344 Q4294.4063,2227.2344 4293.0781,2225.5938 Q4291.7656,2223.9375 4291.7656,2220.8125 Q4291.7656,2217.6875 4293.0781,2216.0313 Q4294.4063,2214.375 4296.9063,2214.375 Q4297.6094,2214.375 4298.25,2214.5313 Q4298.9063,2214.6875 4299.4688,2214.9844 L4299.4688,2217.7031 Q4298.8438,2217.125 4298.25,2216.8594 Q4297.6563,2216.5781 4297.0313,2216.5781 Q4295.6875,2216.5781 4295,2217.6563 Q4294.3125,2218.7188 4294.3125,2220.8125 Q4294.3125,2222.9063 4295,2223.9844 Q4295.6875,2225.0469 4297.0313,2225.0469 Q4297.6563,2225.0469 4298.25,2224.7813 Q4298.8438,2224.5 4299.4688,2223.9219 L4299.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="38" x="4310.5" y="2225.1543">empty</text><!--MD5=[f653d9b6cdd84d2c5b877e873df2047d]
class np.transpose--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.transpose" style="stroke: #A80036; stroke-width: 1.5;" width="96" x="3851.5" y="2205"/><ellipse cx="3866.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3869.4688,2226.6406 Q3868.8906,2226.9375 3868.25,2227.0781 Q3867.6094,2227.2344 3866.9063,2227.2344 Q3864.4063,2227.2344 3863.0781,2225.5938 Q3861.7656,2223.9375 3861.7656,2220.8125 Q3861.7656,2217.6875 3863.0781,2216.0313 Q3864.4063,2214.375 3866.9063,2214.375 Q3867.6094,2214.375 3868.25,2214.5313 Q3868.9063,2214.6875 3869.4688,2214.9844 L3869.4688,2217.7031 Q3868.8438,2217.125 3868.25,2216.8594 Q3867.6563,2216.5781 3867.0313,2216.5781 Q3865.6875,2216.5781 3865,2217.6563 Q3864.3125,2218.7188 3864.3125,2220.8125 Q3864.3125,2222.9063 3865,2223.9844 Q3865.6875,2225.0469 3867.0313,2225.0469 Q3867.6563,2225.0469 3868.25,2224.7813 Q3868.8438,2224.5 3869.4688,2223.9219 L3869.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="64" x="3880.5" y="2225.1543">transpose</text><!--MD5=[78d0f091ec2110eaaed46f86ad936e1b]
class np.unique--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.unique" style="stroke: #A80036; stroke-width: 1.5;" width="75" x="4072" y="2205"/><ellipse cx="4087" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4089.9688,2226.6406 Q4089.3906,2226.9375 4088.75,2227.0781 Q4088.1094,2227.2344 4087.4063,2227.2344 Q4084.9063,2227.2344 4083.5781,2225.5938 Q4082.2656,2223.9375 4082.2656,2220.8125 Q4082.2656,2217.6875 4083.5781,2216.0313 Q4084.9063,2214.375 4087.4063,2214.375 Q4088.1094,2214.375 4088.75,2214.5313 Q4089.4063,2214.6875 4089.9688,2214.9844 L4089.9688,2217.7031 Q4089.3438,2217.125 4088.75,2216.8594 Q4088.1563,2216.5781 4087.5313,2216.5781 Q4086.1875,2216.5781 4085.5,2217.6563 Q4084.8125,2218.7188 4084.8125,2220.8125 Q4084.8125,2222.9063 4085.5,2223.9844 Q4086.1875,2225.0469 4087.5313,2225.0469 Q4088.1563,2225.0469 4088.75,2224.7813 Q4089.3438,2224.5 4089.9688,2223.9219 L4089.9688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="43" x="4101" y="2225.1543">unique</text><!--MD5=[0be945cf7aeececba9803542ad02264d]
class np.ndarray--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.ndarray" style="stroke: #A80036; stroke-width: 1.5;" width="80" x="4953.5" y="2205"/><ellipse cx="4968.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4971.4688,2226.6406 Q4970.8906,2226.9375 4970.25,2227.0781 Q4969.6094,2227.2344 4968.9063,2227.2344 Q4966.4063,2227.2344 4965.0781,2225.5938 Q4963.7656,2223.9375 4963.7656,2220.8125 Q4963.7656,2217.6875 4965.0781,2216.0313 Q4966.4063,2214.375 4968.9063,2214.375 Q4969.6094,2214.375 4970.25,2214.5313 Q4970.9063,2214.6875 4971.4688,2214.9844 L4971.4688,2217.7031 Q4970.8438,2217.125 4970.25,2216.8594 Q4969.6563,2216.5781 4969.0313,2216.5781 Q4967.6875,2216.5781 4967,2217.6563 Q4966.3125,2218.7188 4966.3125,2220.8125 Q4966.3125,2222.9063 4967,2223.9844 Q4967.6875,2225.0469 4969.0313,2225.0469 Q4969.6563,2225.0469 4970.25,2224.7813 Q4970.8438,2224.5 4971.4688,2223.9219 L4971.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="48" x="4982.5" y="2225.1543">ndarray</text><!--MD5=[2d77075c8423dab69fcb66fbba008ad8]
class np.linspace--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.linspace" style="stroke: #A80036; stroke-width: 1.5;" width="84" x="4709.5" y="2205"/><ellipse cx="4724.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4727.4688,2226.6406 Q4726.8906,2226.9375 4726.25,2227.0781 Q4725.6094,2227.2344 4724.9063,2227.2344 Q4722.4063,2227.2344 4721.0781,2225.5938 Q4719.7656,2223.9375 4719.7656,2220.8125 Q4719.7656,2217.6875 4721.0781,2216.0313 Q4722.4063,2214.375 4724.9063,2214.375 Q4725.6094,2214.375 4726.25,2214.5313 Q4726.9063,2214.6875 4727.4688,2214.9844 L4727.4688,2217.7031 Q4726.8438,2217.125 4726.25,2216.8594 Q4725.6563,2216.5781 4725.0313,2216.5781 Q4723.6875,2216.5781 4723,2217.6563 Q4722.3125,2218.7188 4722.3125,2220.8125 Q4722.3125,2222.9063 4723,2223.9844 Q4723.6875,2225.0469 4725.0313,2225.0469 Q4725.6563,2225.0469 4726.25,2224.7813 Q4726.8438,2224.5 4727.4688,2223.9219 L4727.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="52" x="4738.5" y="2225.1543">linspace</text><!--MD5=[ba1832120197c5f4a638a9f1c2222f14]
class np.meshgrid--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="np.meshgrid" style="stroke: #A80036; stroke-width: 1.5;" width="90" x="4828.5" y="2205"/><ellipse cx="4843.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4846.4688,2226.6406 Q4845.8906,2226.9375 4845.25,2227.0781 Q4844.6094,2227.2344 4843.9063,2227.2344 Q4841.4063,2227.2344 4840.0781,2225.5938 Q4838.7656,2223.9375 4838.7656,2220.8125 Q4838.7656,2217.6875 4840.0781,2216.0313 Q4841.4063,2214.375 4843.9063,2214.375 Q4844.6094,2214.375 4845.25,2214.5313 Q4845.9063,2214.6875 4846.4688,2214.9844 L4846.4688,2217.7031 Q4845.8438,2217.125 4845.25,2216.8594 Q4844.6563,2216.5781 4844.0313,2216.5781 Q4842.6875,2216.5781 4842,2217.6563 Q4841.3125,2218.7188 4841.3125,2220.8125 Q4841.3125,2222.9063 4842,2223.9844 Q4842.6875,2225.0469 4844.0313,2225.0469 Q4844.6563,2225.0469 4845.25,2224.7813 Q4845.8438,2224.5 4846.4688,2223.9219 L4846.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="58" x="4857.5" y="2225.1543">meshgrid</text><!--MD5=[30fb284168e4e348e7fe3078fee2ccca]
class pdb2sql.interface--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="pdb2sql.interface" style="stroke: #A80036; stroke-width: 1.5;" width="88" x="5319.5" y="1449"/><ellipse cx="5334.5" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5337.4688,1470.6406 Q5336.8906,1470.9375 5336.25,1471.0781 Q5335.6094,1471.2344 5334.9063,1471.2344 Q5332.4063,1471.2344 5331.0781,1469.5938 Q5329.7656,1467.9375 5329.7656,1464.8125 Q5329.7656,1461.6875 5331.0781,1460.0313 Q5332.4063,1458.375 5334.9063,1458.375 Q5335.6094,1458.375 5336.25,1458.5313 Q5336.9063,1458.6875 5337.4688,1458.9844 L5337.4688,1461.7031 Q5336.8438,1461.125 5336.25,1460.8594 Q5335.6563,1460.5781 5335.0313,1460.5781 Q5333.6875,1460.5781 5333,1461.6563 Q5332.3125,1462.7188 5332.3125,1464.8125 Q5332.3125,1466.9063 5333,1467.9844 Q5333.6875,1469.0469 5335.0313,1469.0469 Q5335.6563,1469.0469 5336.25,1468.7813 Q5336.8438,1468.5 5337.4688,1467.9219 L5337.4688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="56" x="5348.5" y="1469.1543">interface</text><!--MD5=[040be51b22685f7126a71d927f3dc560]
class freesasa.Structure--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="freesasa.Structure" style="stroke: #A80036; stroke-width: 1.5;" width="91" x="6182" y="1449"/><ellipse cx="6197" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6199.9688,1470.6406 Q6199.3906,1470.9375 6198.75,1471.0781 Q6198.1094,1471.2344 6197.4063,1471.2344 Q6194.9063,1471.2344 6193.5781,1469.5938 Q6192.2656,1467.9375 6192.2656,1464.8125 Q6192.2656,1461.6875 6193.5781,1460.0313 Q6194.9063,1458.375 6197.4063,1458.375 Q6198.1094,1458.375 6198.75,1458.5313 Q6199.4063,1458.6875 6199.9688,1458.9844 L6199.9688,1461.7031 Q6199.3438,1461.125 6198.75,1460.8594 Q6198.1563,1460.5781 6197.5313,1460.5781 Q6196.1875,1460.5781 6195.5,1461.6563 Q6194.8125,1462.7188 6194.8125,1464.8125 Q6194.8125,1466.9063 6195.5,1467.9844 Q6196.1875,1469.0469 6197.5313,1469.0469 Q6198.1563,1469.0469 6198.75,1468.7813 Q6199.3438,1468.5 6199.9688,1467.9219 L6199.9688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="59" x="6211" y="1469.1543">Structure</text><!--MD5=[d0aae51ded086482a80e6328e549227e]
class freesasa.calc--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="freesasa.calc" style="stroke: #A80036; stroke-width: 1.5;" width="57" x="6308" y="1449"/><ellipse cx="6323" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6325.9688,1470.6406 Q6325.3906,1470.9375 6324.75,1471.0781 Q6324.1094,1471.2344 6323.4063,1471.2344 Q6320.9063,1471.2344 6319.5781,1469.5938 Q6318.2656,1467.9375 6318.2656,1464.8125 Q6318.2656,1461.6875 6319.5781,1460.0313 Q6320.9063,1458.375 6323.4063,1458.375 Q6324.1094,1458.375 6324.75,1458.5313 Q6325.4063,1458.6875 6325.9688,1458.9844 L6325.9688,1461.7031 Q6325.3438,1461.125 6324.75,1460.8594 Q6324.1563,1460.5781 6323.5313,1460.5781 Q6322.1875,1460.5781 6321.5,1461.6563 Q6320.8125,1462.7188 6320.8125,1464.8125 Q6320.8125,1466.9063 6321.5,1467.9844 Q6322.1875,1469.0469 6323.5313,1469.0469 Q6324.1563,1469.0469 6324.75,1468.7813 Q6325.3438,1468.5 6325.9688,1467.9219 L6325.9688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="25" x="6337" y="1469.1543">calc</text><!--MD5=[fba94170b8fb8b9e9ec9b2db9e016c6e]
class freesasa.selectArea--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="freesasa.selectArea" style="stroke: #A80036; stroke-width: 1.5;" width="99" x="6048" y="1449"/><ellipse cx="6063" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6065.9688,1470.6406 Q6065.3906,1470.9375 6064.75,1471.0781 Q6064.1094,1471.2344 6063.4063,1471.2344 Q6060.9063,1471.2344 6059.5781,1469.5938 Q6058.2656,1467.9375 6058.2656,1464.8125 Q6058.2656,1461.6875 6059.5781,1460.0313 Q6060.9063,1458.375 6063.4063,1458.375 Q6064.1094,1458.375 6064.75,1458.5313 Q6065.4063,1458.6875 6065.9688,1458.9844 L6065.9688,1461.7031 Q6065.3438,1461.125 6064.75,1460.8594 Q6064.1563,1460.5781 6063.5313,1460.5781 Q6062.1875,1460.5781 6061.5,1461.6563 Q6060.8125,1462.7188 6060.8125,1464.8125 Q6060.8125,1466.9063 6061.5,1467.9844 Q6062.1875,1469.0469 6063.5313,1469.0469 Q6064.1563,1469.0469 6064.75,1468.7813 Q6065.3438,1468.5 6065.9688,1467.9219 L6065.9688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="67" x="6077" y="1469.1543">selectArea</text><!--MD5=[7c0eb44a73d608de579ca8bf2904c701]
class glob.glob--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="glob.glob" style="stroke: #A80036; stroke-width: 1.5;" width="59" x="6095" y="2205"/><ellipse cx="6110" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6112.9688,2226.6406 Q6112.3906,2226.9375 6111.75,2227.0781 Q6111.1094,2227.2344 6110.4063,2227.2344 Q6107.9063,2227.2344 6106.5781,2225.5938 Q6105.2656,2223.9375 6105.2656,2220.8125 Q6105.2656,2217.6875 6106.5781,2216.0313 Q6107.9063,2214.375 6110.4063,2214.375 Q6111.1094,2214.375 6111.75,2214.5313 Q6112.4063,2214.6875 6112.9688,2214.9844 L6112.9688,2217.7031 Q6112.3438,2217.125 6111.75,2216.8594 Q6111.1563,2216.5781 6110.5313,2216.5781 Q6109.1875,2216.5781 6108.5,2217.6563 Q6107.8125,2218.7188 6107.8125,2220.8125 Q6107.8125,2222.9063 6108.5,2223.9844 Q6109.1875,2225.0469 6110.5313,2225.0469 Q6111.1563,2225.0469 6111.75,2224.7813 Q6112.3438,2224.5 6112.9688,2223.9219 L6112.9688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="27" x="6124" y="2225.1543">glob</text><!--MD5=[df1698989baf3cc9da7b59c6d816444a]
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class contact_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="130.7656" id="contact_py" style="stroke: #A80036; stroke-width: 1.5;" width="158" x="4626.5" y="1018.5"/><ellipse cx="4667.6" cy="1037.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M4663.3188,1031.0781 L4666.2406,1031.0781 L4667.7094,1036.5156 L4669.1781,1031.0781 L4672.1156,1031.0781 L4672.1156,1043.4688 L4670.0063,1043.4688 L4670.0063,1033.5469 L4668.6938,1038.9688 L4666.7563,1038.9688 L4665.4281,1033.5469 L4665.4281,1043.4688 L4663.3188,1043.4688 L4663.3188,1031.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="4691.4" y="1034.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="68" x="4687.4" y="1048.6074">contact_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="4627.5" x2="4783.5" y1="1056.4375" y2="1056.4375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="23" x="4632.5" y="1070.6479">_log</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="85" x="4632.5" y="1083.4526">covalent_cutoff</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="52" x="4632.5" y="1096.2573">cutoff_13</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="52" x="4632.5" y="1109.062">cutoff_14</text><line style="stroke: #A80036; stroke-width: 1.0;" x1="4627.5" x2="4783.5" y1="1115.6563" y2="1115.6563"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="146" x="4632.5" y="1129.8667">_get_nonbonded_energy()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="4632.5" y="1142.6714">add_features()</text><!--MD5=[f8da8b6fa98f4c94d9e04df8ed767d99]
class UnknownType--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="UnknownType" style="stroke: #A80036; stroke-width: 1.5;" width="118" x="2822.5" y="1449"/><ellipse cx="2837.5" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2840.4688,1470.6406 Q2839.8906,1470.9375 2839.25,1471.0781 Q2838.6094,1471.2344 2837.9063,1471.2344 Q2835.4063,1471.2344 2834.0781,1469.5938 Q2832.7656,1467.9375 2832.7656,1464.8125 Q2832.7656,1461.6875 2834.0781,1460.0313 Q2835.4063,1458.375 2837.9063,1458.375 Q2838.6094,1458.375 2839.25,1458.5313 Q2839.9063,1458.6875 2840.4688,1458.9844 L2840.4688,1461.7031 Q2839.8438,1461.125 2839.25,1460.8594 Q2838.6563,1460.5781 2838.0313,1460.5781 Q2836.6875,1460.5781 2836,1461.6563 Q2835.3125,1462.7188 2835.3125,1464.8125 Q2835.3125,1466.9063 2836,1467.9844 Q2836.6875,1469.0469 2838.0313,1469.0469 Q2838.6563,1469.0469 2839.25,1468.7813 Q2839.8438,1468.5 2840.4688,1467.9219 L2840.4688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="86" x="2851.5" y="1469.1543">UnknownType</text><!--MD5=[c91876eb879d3b1b1809ad7b895018ff]
class exposure_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="117.9609" id="exposure_py" style="stroke: #A80036; stroke-width: 1.5;" width="110" x="3726.5" y="1025"/><ellipse cx="3741.5" cy="1043.9688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3737.2188,1037.5781 L3740.1406,1037.5781 L3741.6094,1043.0156 L3743.0781,1037.5781 L3746.0156,1037.5781 L3746.0156,1049.9688 L3743.9063,1049.9688 L3743.9063,1040.0469 L3742.5938,1045.4688 L3740.6563,1045.4688 L3739.3281,1040.0469 L3739.3281,1049.9688 L3737.2188,1049.9688 L3737.2188,1037.5781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="3764.5" y="1041.1387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="78" x="3755.5" y="1055.1074">exposure_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="3727.5" x2="3835.5" y1="1062.9375" y2="1062.9375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="23" x="3732.5" y="1077.1479">_log</text><line style="stroke: #A80036; stroke-width: 1.0;" x1="3727.5" x2="3835.5" y1="1083.7422" y2="1083.7422"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="3732.5" y="1097.9526">add_features()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="3732.5" y="1110.7573">handle_sigint()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="95" x="3732.5" y="1123.562">handle_timeout()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="89" x="3732.5" y="1136.3667">space_if_none()</text><!--MD5=[89082d8e2a16c7107f7e772cfb6c78db]
class PDBParser--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="PDBParser" style="stroke: #A80036; stroke-width: 1.5;" width="98" x="437.5" y="1449"/><ellipse cx="452.5" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M455.4688,1470.6406 Q454.8906,1470.9375 454.25,1471.0781 Q453.6094,1471.2344 452.9063,1471.2344 Q450.4063,1471.2344 449.0781,1469.5938 Q447.7656,1467.9375 447.7656,1464.8125 Q447.7656,1461.6875 449.0781,1460.0313 Q450.4063,1458.375 452.9063,1458.375 Q453.6094,1458.375 454.25,1458.5313 Q454.9063,1458.6875 455.4688,1458.9844 L455.4688,1461.7031 Q454.8438,1461.125 454.25,1460.8594 Q453.6563,1460.5781 453.0313,1460.5781 Q451.6875,1460.5781 451,1461.6563 Q450.3125,1462.7188 450.3125,1464.8125 Q450.3125,1466.9063 451,1467.9844 Q451.6875,1469.0469 453.0313,1469.0469 Q453.6563,1469.0469 454.25,1468.7813 Q454.8438,1468.5 455.4688,1467.9219 L455.4688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="66" x="466.5" y="1469.1543">PDBParser</text><!--MD5=[36526142a96cd7a13ebc333262e6a747]
class HSExposureCA--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="HSExposureCA" style="stroke: #A80036; stroke-width: 1.5;" width="123" x="2989" y="1449"/><ellipse cx="3004" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3006.9688,1470.6406 Q3006.3906,1470.9375 3005.75,1471.0781 Q3005.1094,1471.2344 3004.4063,1471.2344 Q3001.9063,1471.2344 3000.5781,1469.5938 Q2999.2656,1467.9375 2999.2656,1464.8125 Q2999.2656,1461.6875 3000.5781,1460.0313 Q3001.9063,1458.375 3004.4063,1458.375 Q3005.1094,1458.375 3005.75,1458.5313 Q3006.4063,1458.6875 3006.9688,1458.9844 L3006.9688,1461.7031 Q3006.3438,1461.125 3005.75,1460.8594 Q3005.1563,1460.5781 3004.5313,1460.5781 Q3003.1875,1460.5781 3002.5,1461.6563 Q3001.8125,1462.7188 3001.8125,1464.8125 Q3001.8125,1466.9063 3002.5,1467.9844 Q3003.1875,1469.0469 3004.5313,1469.0469 Q3005.1563,1469.0469 3005.75,1468.7813 Q3006.3438,1468.5 3006.9688,1467.9219 L3006.9688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="91" x="3018" y="1469.1543">HSExposureCA</text><!--MD5=[bba71396a754de12f17a3127296d667a]
class _ContactDensity--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="124.8281" id="_ContactDensity" style="stroke: #A80036; stroke-width: 1.5;" width="133" x="5443" y="1402.5"/><ellipse cx="5458" cy="1418.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5460.9688,1424.1406 Q5460.3906,1424.4375 5459.75,1424.5781 Q5459.1094,1424.7344 5458.4063,1424.7344 Q5455.9063,1424.7344 5454.5781,1423.0938 Q5453.2656,1421.4375 5453.2656,1418.3125 Q5453.2656,1415.1875 5454.5781,1413.5313 Q5455.9063,1411.875 5458.4063,1411.875 Q5459.1094,1411.875 5459.75,1412.0313 Q5460.4063,1412.1875 5460.9688,1412.4844 L5460.9688,1415.2031 Q5460.3438,1414.625 5459.75,1414.3594 Q5459.1563,1414.0781 5458.5313,1414.0781 Q5457.1875,1414.0781 5456.5,1415.1563 Q5455.8125,1416.2188 5455.8125,1418.3125 Q5455.8125,1420.4063 5456.5,1421.4844 Q5457.1875,1422.5469 5458.5313,1422.5469 Q5459.1563,1422.5469 5459.75,1422.2813 Q5460.3438,1422 5460.9688,1421.4219 L5460.9688,1424.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="101" x="5472" y="1422.6543">_ContactDensity</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5444" x2="5575" y1="1434.5" y2="1434.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="68" x="5449" y="1448.7104">connections</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="52" x="5449" y="1461.5151">densities</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="10" x="5449" y="1474.3198">id</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="42" x="5449" y="1487.1245">polarity</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="19" x="5449" y="1499.9292">res</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5444" x2="5575" y1="1506.5234" y2="1506.5234"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="5449" y="1520.7339">__init__()</text><!--MD5=[74695c838a73639811bf1a37cc41fba6]
class Polarity--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="104.0234" id="Polarity" style="stroke: #A80036; stroke-width: 1.5;" width="78" x="2154.5" y="3974"/><ellipse cx="2169.5" cy="3990" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2172.4688,3995.6406 Q2171.8906,3995.9375 2171.25,3996.0781 Q2170.6094,3996.2344 2169.9063,3996.2344 Q2167.4063,3996.2344 2166.0781,3994.5938 Q2164.7656,3992.9375 2164.7656,3989.8125 Q2164.7656,3986.6875 2166.0781,3985.0313 Q2167.4063,3983.375 2169.9063,3983.375 Q2170.6094,3983.375 2171.25,3983.5313 Q2171.9063,3983.6875 2172.4688,3983.9844 L2172.4688,3986.7031 Q2171.8438,3986.125 2171.25,3985.8594 Q2170.6563,3985.5781 2170.0313,3985.5781 Q2168.6875,3985.5781 2168,3986.6563 Q2167.3125,3987.7188 2167.3125,3989.8125 Q2167.3125,3991.9063 2168,3992.9844 Q2168.6875,3994.0469 2170.0313,3994.0469 Q2170.6563,3994.0469 2171.25,3993.7813 Q2171.8438,3993.5 2172.4688,3992.9219 L2172.4688,3995.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="46" x="2183.5" y="3994.1543">Polarity</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2155.5" x2="2231.5" y1="4006" y2="4006"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="55" x="2160.5" y="4020.2104">NEGATIVE</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="61" x="2160.5" y="4033.0151">NONPOLAR</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="36" x="2160.5" y="4045.8198">POLAR</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="51" x="2160.5" y="4058.6245">POSITIVE</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="39" x="2160.5" y="4071.4292">onehot</text><!--MD5=[4456a9e786adc7844e7d08bc84484b1f]
class irc_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="105.1563" id="irc_py" style="stroke: #A80036; stroke-width: 1.5;" width="118" x="5232.5" y="1031.5"/><ellipse cx="5261" cy="1050.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5256.7188,1044.0781 L5259.6406,1044.0781 L5261.1094,1049.5156 L5262.5781,1044.0781 L5265.5156,1044.0781 L5265.5156,1056.4688 L5263.4063,1056.4688 L5263.4063,1046.5469 L5262.0938,1051.9688 L5260.1563,1051.9688 L5258.8281,1046.5469 L5258.8281,1056.4688 L5256.7188,1056.4688 L5256.7188,1044.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="5276" y="1047.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="35" x="5288.5" y="1061.6074">irc_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5233.5" x2="5349.5" y1="1069.4375" y2="1069.4375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="23" x="5238.5" y="1083.6479">_log</text><line style="stroke: #A80036; stroke-width: 1.0;" x1="5233.5" x2="5349.5" y1="1090.2422" y2="1090.2422"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="106" x="5238.5" y="1104.4526">_id_from_residue()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="5238.5" y="1117.2573">add_features()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="57" x="5238.5" y="1130.062">get_IRCs()</text><!--MD5=[9d85932bca86afca572070d9d5d2078d]
class DSSPError--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="DSSPError" style="stroke: #A80036; stroke-width: 1.5;" width="96" x="134.5" y="1449"/><ellipse cx="149.5" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M152.4688,1470.6406 Q151.8906,1470.9375 151.25,1471.0781 Q150.6094,1471.2344 149.9063,1471.2344 Q147.4063,1471.2344 146.0781,1469.5938 Q144.7656,1467.9375 144.7656,1464.8125 Q144.7656,1461.6875 146.0781,1460.0313 Q147.4063,1458.375 149.9063,1458.375 Q150.6094,1458.375 151.25,1458.5313 Q151.9063,1458.6875 152.4688,1458.9844 L152.4688,1461.7031 Q151.8438,1461.125 151.25,1460.8594 Q150.6563,1460.5781 150.0313,1460.5781 Q148.6875,1460.5781 148,1461.6563 Q147.3125,1462.7188 147.3125,1464.8125 Q147.3125,1466.9063 148,1467.9844 Q148.6875,1469.0469 150.0313,1469.0469 Q150.6563,1469.0469 151.25,1468.7813 Q151.8438,1468.5 152.4688,1467.9219 L152.4688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="64" x="163.5" y="1469.1543">DSSPError</text><!--MD5=[8db60afef7a3447bbe27c5ed187fdac2]
class Exception--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="Exception" style="stroke: #A80036; stroke-width: 1.5;" width="93" x="6" y="1449"/><ellipse cx="21" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M23.9688,1470.6406 Q23.3906,1470.9375 22.75,1471.0781 Q22.1094,1471.2344 21.4063,1471.2344 Q18.9063,1471.2344 17.5781,1469.5938 Q16.2656,1467.9375 16.2656,1464.8125 Q16.2656,1461.6875 17.5781,1460.0313 Q18.9063,1458.375 21.4063,1458.375 Q22.1094,1458.375 22.75,1458.5313 Q23.4063,1458.6875 23.9688,1458.9844 L23.9688,1461.7031 Q23.3438,1461.125 22.75,1460.8594 Q22.1563,1460.5781 21.5313,1460.5781 Q20.1875,1460.5781 19.5,1461.6563 Q18.8125,1462.7188 18.8125,1464.8125 Q18.8125,1466.9063 19.5,1467.9844 Q20.1875,1469.0469 21.5313,1469.0469 Q22.1563,1469.0469 22.75,1468.7813 Q23.3438,1468.5 23.9688,1467.9219 L23.9688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="61" x="35" y="1469.1543">Exception</text><!--MD5=[641c63cc6756f26ab774f8709d37add6]
class SecondarySctructure--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="91.2188" id="SecondarySctructure" style="stroke: #A80036; stroke-width: 1.5;" width="164" x="262.5" y="2175.5"/><ellipse cx="277.5" cy="2191.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M280.4688,2197.1406 Q279.8906,2197.4375 279.25,2197.5781 Q278.6094,2197.7344 277.9063,2197.7344 Q275.4063,2197.7344 274.0781,2196.0938 Q272.7656,2194.4375 272.7656,2191.3125 Q272.7656,2188.1875 274.0781,2186.5313 Q275.4063,2184.875 277.9063,2184.875 Q278.6094,2184.875 279.25,2185.0313 Q279.9063,2185.1875 280.4688,2185.4844 L280.4688,2188.2031 Q279.8438,2187.625 279.25,2187.3594 Q278.6563,2187.0781 278.0313,2187.0781 Q276.6875,2187.0781 276,2188.1563 Q275.3125,2189.2188 275.3125,2191.3125 Q275.3125,2193.4063 276,2194.4844 Q276.6875,2195.5469 278.0313,2195.5469 Q278.6563,2195.5469 279.25,2195.2813 Q279.8438,2195 280.4688,2194.4219 L280.4688,2197.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="132" x="291.5" y="2195.6543">SecondarySctructure</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="263.5" x2="425.5" y1="2207.5" y2="2207.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="26" x="268.5" y="2221.7104">COIL</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="31" x="268.5" y="2234.5151">HELIX</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="45" x="268.5" y="2247.3198">STRAND</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="39" x="268.5" y="2260.1245">onehot</text><!--MD5=[4298d0dcfa55ecd56071adba7add2166]
class Enum--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="Enum" style="stroke: #A80036; stroke-width: 1.5;" width="67" x="3308" y="2205"/><ellipse cx="3323" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3325.9688,2226.6406 Q3325.3906,2226.9375 3324.75,2227.0781 Q3324.1094,2227.2344 3323.4063,2227.2344 Q3320.9063,2227.2344 3319.5781,2225.5938 Q3318.2656,2223.9375 3318.2656,2220.8125 Q3318.2656,2217.6875 3319.5781,2216.0313 Q3320.9063,2214.375 3323.4063,2214.375 Q3324.1094,2214.375 3324.75,2214.5313 Q3325.4063,2214.6875 3325.9688,2214.9844 L3325.9688,2217.7031 Q3325.3438,2217.125 3324.75,2216.8594 Q3324.1563,2216.5781 3323.5313,2216.5781 Q3322.1875,2216.5781 3321.5,2217.6563 Q3320.8125,2218.7188 3320.8125,2220.8125 Q3320.8125,2222.9063 3321.5,2223.9844 Q3322.1875,2225.0469 3323.5313,2225.0469 Q3324.1563,2225.0469 3324.75,2224.7813 Q3325.3438,2224.5 3325.9688,2223.9219 L3325.9688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="35" x="3337" y="2225.1543">Enum</text><!--MD5=[796bc0e8d8cdbe355b8e7f2fbab91f83]
class secondary_structure_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="117.9609" id="secondary_structure_py" style="stroke: #A80036; stroke-width: 1.5;" width="181" x="279" y="1025"/><ellipse cx="294" cy="1043.9688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M289.7188,1037.5781 L292.6406,1037.5781 L294.1094,1043.0156 L295.5781,1037.5781 L298.5156,1037.5781 L298.5156,1049.9688 L296.4063,1049.9688 L296.4063,1040.0469 L295.0938,1045.4688 L293.1563,1045.4688 L291.8281,1040.0469 L291.8281,1049.9688 L289.7188,1049.9688 L289.7188,1037.5781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="352.5" y="1041.1387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="149" x="308" y="1055.1074">secondary_structure_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="280" x2="459" y1="1062.9375" y2="1062.9375"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="280" x2="459" y1="1070.9375" y2="1070.9375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="73" x="285" y="1085.1479">_check_pdb()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="135" x="285" y="1097.9526">_classify_secstructure()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="82" x="285" y="1110.7573">_get_records()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="110" x="285" y="1123.562">_get_secstructure()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="285" y="1136.3667">add_features()</text><!--MD5=[6ee28fe9a52c34571f46648859859c99]
class DSSP--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="DSSP" style="stroke: #A80036; stroke-width: 1.5;" width="65" x="337" y="1449"/><ellipse cx="352" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M354.9688,1470.6406 Q354.3906,1470.9375 353.75,1471.0781 Q353.1094,1471.2344 352.4063,1471.2344 Q349.9063,1471.2344 348.5781,1469.5938 Q347.2656,1467.9375 347.2656,1464.8125 Q347.2656,1461.6875 348.5781,1460.0313 Q349.9063,1458.375 352.4063,1458.375 Q353.1094,1458.375 353.75,1458.5313 Q354.4063,1458.6875 354.9688,1458.9844 L354.9688,1461.7031 Q354.3438,1461.125 353.75,1460.8594 Q353.1563,1460.5781 352.5313,1460.5781 Q351.1875,1460.5781 350.5,1461.6563 Q349.8125,1462.7188 349.8125,1464.8125 Q349.8125,1466.9063 350.5,1467.9844 Q351.1875,1469.0469 352.5313,1469.0469 Q353.1563,1469.0469 353.75,1468.7813 Q354.3438,1468.5 354.9688,1467.9219 L354.9688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="33" x="366" y="1469.1543">DSSP</text><!--MD5=[02a8429b66d8e255c4e8f5d2f8378664]
class surfacearea_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="92.3516" id="surfacearea_py" style="stroke: #A80036; stroke-width: 1.5;" width="128" x="6112.5" y="1038"/><ellipse cx="6127.5" cy="1056.9688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6123.2188,1050.5781 L6126.1406,1050.5781 L6127.6094,1056.0156 L6129.0781,1050.5781 L6132.0156,1050.5781 L6132.0156,1062.9688 L6129.9063,1062.9688 L6129.9063,1053.0469 L6128.5938,1058.4688 L6126.6563,1058.4688 L6125.3281,1053.0469 L6125.3281,1062.9688 L6123.2188,1062.9688 L6123.2188,1050.5781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="6159.5" y="1054.1387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="96" x="6141.5" y="1068.1074">surfacearea_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="6113.5" x2="6239.5" y1="1075.9375" y2="1075.9375"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="6113.5" x2="6239.5" y1="1083.9375" y2="1083.9375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="6118.5" y="1098.1479">add_bsa()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="6118.5" y="1110.9526">add_features()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="63" x="6118.5" y="1123.7573">add_sasa()</text><!--MD5=[afee8e0990b95724942b66463789a6d9]
class aminoacid_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="37.9375" id="aminoacid_py" style="stroke: #A80036; stroke-width: 1.5;" width="116" x="2116.5" y="3226.5"/><ellipse cx="2131.5" cy="3245.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2127.2188,3239.0781 L2130.1406,3239.0781 L2131.6094,3244.5156 L2133.0781,3239.0781 L2136.0156,3239.0781 L2136.0156,3251.4688 L2133.9063,3251.4688 L2133.9063,3241.5469 L2132.5938,3246.9688 L2130.6563,3246.9688 L2129.3281,3241.5469 L2129.3281,3251.4688 L2127.2188,3251.4688 L2127.2188,3239.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="2157.5" y="3242.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="84" x="2145.5" y="3256.6074">aminoacid_py</text><!--MD5=[56bef2825b3e80a71aa0a14a23a05d28]
class AtomicElement--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="129.6328" id="AtomicElement" style="stroke: #A80036; stroke-width: 1.5;" width="125" x="3257" y="3180.5"/><ellipse cx="3272" cy="3196.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3274.9688,3202.1406 Q3274.3906,3202.4375 3273.75,3202.5781 Q3273.1094,3202.7344 3272.4063,3202.7344 Q3269.9063,3202.7344 3268.5781,3201.0938 Q3267.2656,3199.4375 3267.2656,3196.3125 Q3267.2656,3193.1875 3268.5781,3191.5313 Q3269.9063,3189.875 3272.4063,3189.875 Q3273.1094,3189.875 3273.75,3190.0313 Q3274.4063,3190.1875 3274.9688,3190.4844 L3274.9688,3193.2031 Q3274.3438,3192.625 3273.75,3192.3594 Q3273.1563,3192.0781 3272.5313,3192.0781 Q3271.1875,3192.0781 3270.5,3193.1563 Q3269.8125,3194.2188 3269.8125,3196.3125 Q3269.8125,3198.4063 3270.5,3199.4844 Q3271.1875,3200.5469 3272.5313,3200.5469 Q3273.1563,3200.5469 3273.75,3200.2813 Q3274.3438,3200 3274.9688,3199.4219 L3274.9688,3202.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="93" x="3286" y="3200.6543">AtomicElement</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="3258" x2="3381" y1="3212.5" y2="3212.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="8" x="3263" y="3226.7104">C</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="8" x="3263" y="3239.5151">H</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="8" x="3263" y="3252.3198">N</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="9" x="3263" y="3265.1245">O</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="7" x="3263" y="3277.9292">P</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="8" x="3263" y="3290.7339">S</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="39" x="3263" y="3303.5386">onehot</text><!--MD5=[f18b0f967872e82ff276115ca1b4c569]
class Atom--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="240.0703" id="Atom" style="stroke: #A80036; stroke-width: 1.5;" width="97" x="3271" y="2741.5"/><ellipse cx="3300.85" cy="2757.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3303.8188,2763.1406 Q3303.2406,2763.4375 3302.6,2763.5781 Q3301.9594,2763.7344 3301.2563,2763.7344 Q3298.7563,2763.7344 3297.4281,2762.0938 Q3296.1156,2760.4375 3296.1156,2757.3125 Q3296.1156,2754.1875 3297.4281,2752.5313 Q3298.7563,2750.875 3301.2563,2750.875 Q3301.9594,2750.875 3302.6,2751.0313 Q3303.2563,2751.1875 3303.8188,2751.4844 L3303.8188,2754.2031 Q3303.1938,2753.625 3302.6,2753.3594 Q3302.0063,2753.0781 3301.3813,2753.0781 Q3300.0375,2753.0781 3299.35,2754.1563 Q3298.6625,2755.2188 3298.6625,2757.3125 Q3298.6625,2759.4063 3299.35,2760.4844 Q3300.0375,2761.5469 3301.3813,2761.5469 Q3302.0063,2761.5469 3302.6,2761.2813 Q3303.1938,2761 3303.8188,2760.4219 L3303.8188,2763.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="32" x="3318.15" y="2761.6543">Atom</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="3272" x2="3367" y1="2773.5" y2="2773.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="52" x="3277" y="2787.7104">_element</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="38" x="3277" y="2800.5151">_name</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="65" x="3277" y="2813.3198">_occupancy</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="51" x="3277" y="2826.1245">_position</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="3277" y="2838.9292">_residue</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="46" x="3277" y="2851.7339">element</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="32" x="3277" y="2864.5386">name</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="59" x="3277" y="2877.3433">occupancy</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="45" x="3277" y="2890.1479">position</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="43" x="3277" y="2902.9526">residue</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="3272" x2="3367" y1="2909.5469" y2="2909.5469"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="46" x="3277" y="2923.7573">__eq__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="60" x="3277" y="2936.562">__hash__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="3277" y="2949.3667">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="3277" y="2962.1714">__repr__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="85" x="3277" y="2974.9761">change_altloc()</text><!--MD5=[8d17e5c0df8cf739e0be8c867dfd2028]
class Residue--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="291.2891" id="Residue" style="stroke: #A80036; stroke-width: 1.5;" width="101" x="2251" y="2367"/><ellipse cx="2274.55" cy="2383" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2277.5188,2388.6406 Q2276.9406,2388.9375 2276.3,2389.0781 Q2275.6594,2389.2344 2274.9563,2389.2344 Q2272.4563,2389.2344 2271.1281,2387.5938 Q2269.8156,2385.9375 2269.8156,2382.8125 Q2269.8156,2379.6875 2271.1281,2378.0313 Q2272.4563,2376.375 2274.9563,2376.375 Q2275.6594,2376.375 2276.3,2376.5313 Q2276.9563,2376.6875 2277.5188,2376.9844 L2277.5188,2379.7031 Q2276.8938,2379.125 2276.3,2378.8594 Q2275.7063,2378.5781 2275.0813,2378.5781 Q2273.7375,2378.5781 2273.05,2379.6563 Q2272.3625,2380.7188 2272.3625,2382.8125 Q2272.3625,2384.9063 2273.05,2385.9844 Q2273.7375,2387.0469 2275.0813,2387.0469 Q2275.7063,2387.0469 2276.3,2386.7813 Q2276.8938,2386.5 2277.5188,2385.9219 L2277.5188,2388.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="50" x="2290.45" y="2387.1543">Residue</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2252" x2="2351" y1="2399" y2="2399"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="70" x="2257" y="2413.2104">_amino_acid</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="42" x="2257" y="2426.0151">_atoms</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="36" x="2257" y="2438.8198">_chain</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="89" x="2257" y="2451.6245">_insertion_code</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="50" x="2257" y="2464.4292">_number</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="64" x="2257" y="2477.2339">amino_acid</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="36" x="2257" y="2490.0386">atoms</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="30" x="2257" y="2502.8433">chain</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="2257" y="2515.6479">insertion_code</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="44" x="2257" y="2528.4526">number</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="2257" y="2541.2573">number_string</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="45" x="2257" y="2554.062">position</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2252" x2="2351" y1="2560.6563" y2="2560.6563"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="46" x="2257" y="2574.8667">__eq__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="60" x="2257" y="2587.6714">__hash__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="2257" y="2600.4761">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="2257" y="2613.2808">__repr__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="64" x="2257" y="2626.0854">add_atom()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="68" x="2257" y="2638.8901">get_center()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="64" x="2257" y="2651.6948">get_pssm()</text><!--MD5=[217dc1b503d44fd59d8d702b321ddcf8]
class atom_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="37.9375" id="atom_py" style="stroke: #A80036; stroke-width: 1.5;" width="88" x="3637.5" y="2493.5"/><ellipse cx="3652.5" cy="2512.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3648.2188,2506.0781 L3651.1406,2506.0781 L3652.6094,2511.5156 L3654.0781,2506.0781 L3657.0156,2506.0781 L3657.0156,2518.4688 L3654.9063,2518.4688 L3654.9063,2508.5469 L3653.5938,2513.9688 L3651.6563,2513.9688 L3650.3281,2508.5469 L3650.3281,2518.4688 L3648.2188,2518.4688 L3648.2188,2506.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="3664.5" y="2509.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="52" x="3668.5" y="2523.6074">atom_py</text><!--MD5=[220f5f32351d35cc72380e3951491ed2]
class Pair--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="137.6328" id="Pair" style="stroke: #A80036; stroke-width: 1.5;" width="72" x="2444.5" y="2152"/><ellipse cx="2466.7" cy="2168" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2469.6688,2173.6406 Q2469.0906,2173.9375 2468.45,2174.0781 Q2467.8094,2174.2344 2467.1063,2174.2344 Q2464.6063,2174.2344 2463.2781,2172.5938 Q2461.9656,2170.9375 2461.9656,2167.8125 Q2461.9656,2164.6875 2463.2781,2163.0313 Q2464.6063,2161.375 2467.1063,2161.375 Q2467.8094,2161.375 2468.45,2161.5313 Q2469.1063,2161.6875 2469.6688,2161.9844 L2469.6688,2164.7031 Q2469.0438,2164.125 2468.45,2163.8594 Q2467.8563,2163.5781 2467.2313,2163.5781 Q2465.8875,2163.5781 2465.2,2164.6563 Q2464.5125,2165.7188 2464.5125,2167.8125 Q2464.5125,2169.9063 2465.2,2170.9844 Q2465.8875,2172.0469 2467.2313,2172.0469 Q2467.8563,2172.0469 2468.45,2171.7813 Q2469.0438,2171.5 2469.6688,2170.9219 L2469.6688,2173.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="24" x="2482.3" y="2172.1543">Pair</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2445.5" x2="2515.5" y1="2184" y2="2184"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="32" x="2450.5" y="2198.2104">item1</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="32" x="2450.5" y="2211.0151">item2</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2445.5" x2="2515.5" y1="2217.6094" y2="2217.6094"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="46" x="2450.5" y="2231.8198">__eq__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="60" x="2450.5" y="2244.6245">__hash__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="2450.5" y="2257.4292">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="51" x="2450.5" y="2270.2339">__iter__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="2450.5" y="2283.0386">__repr__()</text><!--MD5=[72ce1314beffbcf60a64ee91fbbc10dc]
class Contact--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="Contact" style="stroke: #A80036; stroke-width: 1.5;" width="81" x="3192" y="2205"/><ellipse cx="3207" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3209.9688,2226.6406 Q3209.3906,2226.9375 3208.75,2227.0781 Q3208.1094,2227.2344 3207.4063,2227.2344 Q3204.9063,2227.2344 3203.5781,2225.5938 Q3202.2656,2223.9375 3202.2656,2220.8125 Q3202.2656,2217.6875 3203.5781,2216.0313 Q3204.9063,2214.375 3207.4063,2214.375 Q3208.1094,2214.375 3208.75,2214.5313 Q3209.4063,2214.6875 3209.9688,2214.9844 L3209.9688,2217.7031 Q3209.3438,2217.125 3208.75,2216.8594 Q3208.1563,2216.5781 3207.5313,2216.5781 Q3206.1875,2216.5781 3205.5,2217.6563 Q3204.8125,2218.7188 3204.8125,2220.8125 Q3204.8125,2222.9063 3205.5,2223.9844 Q3206.1875,2225.0469 3207.5313,2225.0469 Q3208.1563,2225.0469 3208.75,2224.7813 Q3209.3438,2224.5 3209.9688,2223.9219 L3209.9688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="49" x="3221" y="2225.1543">Contact</text><!--MD5=[af2c5ce85c02d1716125757f0fa1792e]
class ABC--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="ABC" style="stroke: #A80036; stroke-width: 1.5;" width="56" x="3100.5" y="2205"/><ellipse cx="3115.5" cy="2221" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3118.4688,2226.6406 Q3117.8906,2226.9375 3117.25,2227.0781 Q3116.6094,2227.2344 3115.9063,2227.2344 Q3113.4063,2227.2344 3112.0781,2225.5938 Q3110.7656,2223.9375 3110.7656,2220.8125 Q3110.7656,2217.6875 3112.0781,2216.0313 Q3113.4063,2214.375 3115.9063,2214.375 Q3116.6094,2214.375 3117.25,2214.5313 Q3117.9063,2214.6875 3118.4688,2214.9844 L3118.4688,2217.7031 Q3117.8438,2217.125 3117.25,2216.8594 Q3116.6563,2216.5781 3116.0313,2216.5781 Q3114.6875,2216.5781 3114,2217.6563 Q3113.3125,2218.7188 3113.3125,2220.8125 Q3113.3125,2222.9063 3114,2223.9844 Q3114.6875,2225.0469 3116.0313,2225.0469 Q3116.6563,2225.0469 3117.25,2224.7813 Q3117.8438,2224.5 3118.4688,2223.9219 L3118.4688,2226.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="24" x="3129.5" y="2225.1543">ABC</text><!--MD5=[e6387bda469e630c70bc2059e65b0505]
class ResidueContact--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="112.0234" id="ResidueContact" style="stroke: #A80036; stroke-width: 1.5;" width="131" x="2654" y="2165"/><ellipse cx="2669" cy="2181" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2671.9688,2186.6406 Q2671.3906,2186.9375 2670.75,2187.0781 Q2670.1094,2187.2344 2669.4063,2187.2344 Q2666.9063,2187.2344 2665.5781,2185.5938 Q2664.2656,2183.9375 2664.2656,2180.8125 Q2664.2656,2177.6875 2665.5781,2176.0313 Q2666.9063,2174.375 2669.4063,2174.375 Q2670.1094,2174.375 2670.75,2174.5313 Q2671.4063,2174.6875 2671.9688,2174.9844 L2671.9688,2177.7031 Q2671.3438,2177.125 2670.75,2176.8594 Q2670.1563,2176.5781 2669.5313,2176.5781 Q2668.1875,2176.5781 2667.5,2177.6563 Q2666.8125,2178.7188 2666.8125,2180.8125 Q2666.8125,2182.9063 2667.5,2183.9844 Q2668.1875,2185.0469 2669.5313,2185.0469 Q2670.1563,2185.0469 2670.75,2184.7813 Q2671.3438,2184.5 2671.9688,2183.9219 L2671.9688,2186.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="99" x="2683" y="2185.1543">ResidueContact</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2655" x2="2784" y1="2197" y2="2197"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="2660" y="2211.2104">_residue1</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="2660" y="2224.0151">_residue2</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="50" x="2660" y="2236.8198">residue1</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="50" x="2660" y="2249.6245">residue2</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2655" x2="2784" y1="2256.2188" y2="2256.2188"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="2660" y="2270.4292">__init__()</text><!--MD5=[91dda4d48bd5f173af6ea697a6e608e6]
class AtomicContact--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="112.0234" id="AtomicContact" style="stroke: #A80036; stroke-width: 1.5;" width="123" x="3410" y="2165"/><ellipse cx="3425" cy="2181" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3427.9688,2186.6406 Q3427.3906,2186.9375 3426.75,2187.0781 Q3426.1094,2187.2344 3425.4063,2187.2344 Q3422.9063,2187.2344 3421.5781,2185.5938 Q3420.2656,2183.9375 3420.2656,2180.8125 Q3420.2656,2177.6875 3421.5781,2176.0313 Q3422.9063,2174.375 3425.4063,2174.375 Q3426.1094,2174.375 3426.75,2174.5313 Q3427.4063,2174.6875 3427.9688,2174.9844 L3427.9688,2177.7031 Q3427.3438,2177.125 3426.75,2176.8594 Q3426.1563,2176.5781 3425.5313,2176.5781 Q3424.1875,2176.5781 3423.5,2177.6563 Q3422.8125,2178.7188 3422.8125,2180.8125 Q3422.8125,2182.9063 3423.5,2183.9844 Q3424.1875,2185.0469 3425.5313,2185.0469 Q3426.1563,2185.0469 3426.75,2184.7813 Q3427.3438,2184.5 3427.9688,2183.9219 L3427.9688,2186.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="91" x="3439" y="2185.1543">AtomicContact</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="3411" x2="3532" y1="2197" y2="2197"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="42" x="3416" y="2211.2104">_atom1</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="42" x="3416" y="2224.0151">_atom2</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="36" x="3416" y="2236.8198">atom1</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="36" x="3416" y="2249.6245">atom2</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="3411" x2="3532" y1="2256.2188" y2="2256.2188"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="3416" y="2270.4292">__init__()</text><!--MD5=[8c8808a12a538698bbfa08d1912cadc4]
class pair_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="37.9375" id="pair_py" style="stroke: #A80036; stroke-width: 1.5;" width="88" x="2728.5" y="1865.5"/><ellipse cx="2743.5" cy="1884.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2739.2188,1878.0781 L2742.1406,1878.0781 L2743.6094,1883.5156 L2745.0781,1878.0781 L2748.0156,1878.0781 L2748.0156,1890.4688 L2745.9063,1890.4688 L2745.9063,1880.5469 L2744.5938,1885.9688 L2742.6563,1885.9688 L2741.3281,1880.5469 L2741.3281,1890.4688 L2739.2188,1890.4688 L2739.2188,1878.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="2755.5" y="1881.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="44" x="2763.5" y="1895.6074">pair_py</text><!--MD5=[cfc36345eab149570afdc656f2b384de]
class Chain--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="252.875" id="Chain" style="stroke: #A80036; stroke-width: 1.5;" width="90" x="933.5" y="2735"/><ellipse cx="958.85" cy="2751" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M961.8188,2756.6406 Q961.2406,2756.9375 960.6,2757.0781 Q959.9594,2757.2344 959.2563,2757.2344 Q956.7563,2757.2344 955.4281,2755.5938 Q954.1156,2753.9375 954.1156,2750.8125 Q954.1156,2747.6875 955.4281,2746.0313 Q956.7563,2744.375 959.2563,2744.375 Q959.9594,2744.375 960.6,2744.5313 Q961.2563,2744.6875 961.8188,2744.9844 L961.8188,2747.7031 Q961.1938,2747.125 960.6,2746.8594 Q960.0063,2746.5781 959.3813,2746.5781 Q958.0375,2746.5781 957.35,2747.6563 Q956.6625,2748.7188 956.6625,2750.8125 Q956.6625,2752.9063 957.35,2753.9844 Q958.0375,2755.0469 959.3813,2755.0469 Q960.0063,2755.0469 960.6,2754.7813 Q961.1938,2754.5 961.8188,2753.9219 L961.8188,2756.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="35" x="975.15" y="2755.1543">Chain</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="934.5" x2="1022.5" y1="2767" y2="2767"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="16" x="939.5" y="2781.2104">_id</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="41" x="939.5" y="2794.0151">_model</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="38" x="939.5" y="2806.8198">_pssm</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="939.5" y="2819.6245">_residues</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="10" x="939.5" y="2832.4292">id</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="35" x="939.5" y="2845.2339">model</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="32" x="939.5" y="2858.0386">pssm</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="50" x="939.5" y="2870.8433">residues</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="934.5" x2="1022.5" y1="2877.4375" y2="2877.4375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="46" x="939.5" y="2891.6479">__eq__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="60" x="939.5" y="2904.4526">__hash__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="939.5" y="2917.2573">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="939.5" y="2930.062">__repr__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="78" x="939.5" y="2942.8667">add_residue()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="68" x="939.5" y="2955.6714">get_atoms()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="75" x="939.5" y="2968.4761">get_residue()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="78" x="939.5" y="2981.2808">has_residue()</text><!--MD5=[049ce5aaeedca5f5dedb6d18fc37615e]
class SingleResidueVariant--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="124.8281" id="SingleResidueVariant" style="stroke: #A80036; stroke-width: 1.5;" width="165" x="2087" y="2158.5"/><ellipse cx="2102" cy="2174.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2104.9688,2180.1406 Q2104.3906,2180.4375 2103.75,2180.5781 Q2103.1094,2180.7344 2102.4063,2180.7344 Q2099.9063,2180.7344 2098.5781,2179.0938 Q2097.2656,2177.4375 2097.2656,2174.3125 Q2097.2656,2171.1875 2098.5781,2169.5313 Q2099.9063,2167.875 2102.4063,2167.875 Q2103.1094,2167.875 2103.75,2168.0313 Q2104.4063,2168.1875 2104.9688,2168.4844 L2104.9688,2171.2031 Q2104.3438,2170.625 2103.75,2170.3594 Q2103.1563,2170.0781 2102.5313,2170.0781 Q2101.1875,2170.0781 2100.5,2171.1563 Q2099.8125,2172.2188 2099.8125,2174.3125 Q2099.8125,2176.4063 2100.5,2177.4844 Q2101.1875,2178.5469 2102.5313,2178.5469 Q2103.1563,2178.5469 2103.75,2178.2813 Q2104.3438,2178 2104.9688,2177.4219 L2104.9688,2180.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="133" x="2116" y="2178.6543">SingleResidueVariant</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2088" x2="2251" y1="2190.5" y2="2190.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="2093" y="2204.7104">_residue</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="115" x="2093" y="2217.5151">_variant_amino_acid</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="43" x="2093" y="2230.3198">residue</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="109" x="2093" y="2243.1245">variant_amino_acid</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="116" x="2093" y="2255.9292">wildtype_amino_acid</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2088" x2="2251" y1="2262.5234" y2="2262.5234"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="2093" y="2276.7339">__init__()</text><!--MD5=[42bf9d502eb836cd6b1acfc3f0004b23]
class residue_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="37.9375" id="residue_py" style="stroke: #A80036; stroke-width: 1.5;" width="99" x="1771" y="1865.5"/><ellipse cx="1786" cy="1884.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1781.7188,1878.0781 L1784.6406,1878.0781 L1786.1094,1883.5156 L1787.5781,1878.0781 L1790.5156,1878.0781 L1790.5156,1890.4688 L1788.4063,1890.4688 L1788.4063,1880.5469 L1787.0938,1885.9688 L1785.1563,1885.9688 L1783.8281,1880.5469 L1783.8281,1890.4688 L1781.7188,1890.4688 L1781.7188,1878.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="1803.5" y="1881.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="67" x="1800" y="1895.6074">residue_py</text><!--MD5=[d7c01d293e8b045a119c8e3b01d86ff1]
class PDBStructure--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="201.6563" id="PDBStructure" style="stroke: #A80036; stroke-width: 1.5;" width="116" x="754.5" y="3144.5"/><ellipse cx="769.5" cy="3160.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M772.4688,3166.1406 Q771.8906,3166.4375 771.25,3166.5781 Q770.6094,3166.7344 769.9063,3166.7344 Q767.4063,3166.7344 766.0781,3165.0938 Q764.7656,3163.4375 764.7656,3160.3125 Q764.7656,3157.1875 766.0781,3155.5313 Q767.4063,3153.875 769.9063,3153.875 Q770.6094,3153.875 771.25,3154.0313 Q771.9063,3154.1875 772.4688,3154.4844 L772.4688,3157.2031 Q771.8438,3156.625 771.25,3156.3594 Q770.6563,3156.0781 770.0313,3156.0781 Q768.6875,3156.0781 768,3157.1563 Q767.3125,3158.2188 767.3125,3160.3125 Q767.3125,3162.4063 768,3163.4844 Q768.6875,3164.5469 770.0313,3164.5469 Q770.6563,3164.5469 771.25,3164.2813 Q771.8438,3164 772.4688,3163.4219 L772.4688,3166.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="84" x="783.5" y="3164.6543">PDBStructure</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="755.5" x2="869.5" y1="3176.5" y2="3176.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="43" x="760.5" y="3190.7104">_chains</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="16" x="760.5" y="3203.5151">_id</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="37" x="760.5" y="3216.3198">chains</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="10" x="760.5" y="3229.1245">id</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="755.5" x2="869.5" y1="3235.7188" y2="3235.7188"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="46" x="760.5" y="3249.9292">__eq__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="60" x="760.5" y="3262.7339">__hash__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="760.5" y="3275.5386">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="760.5" y="3288.3433">__repr__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="65" x="760.5" y="3301.1479">add_chain()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="68" x="760.5" y="3313.9526">get_atoms()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="62" x="760.5" y="3326.7573">get_chain()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="65" x="760.5" y="3339.562">has_chain()</text><!--MD5=[84857ce7bc5a997136bb32df2f97bb88]
class PssmRow--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="124.8281" id="PssmRow" style="stroke: #A80036; stroke-width: 1.5;" width="131" x="1136" y="3183"/><ellipse cx="1169.45" cy="3199" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1172.4188,3204.6406 Q1171.8406,3204.9375 1171.2,3205.0781 Q1170.5594,3205.2344 1169.8563,3205.2344 Q1167.3563,3205.2344 1166.0281,3203.5938 Q1164.7156,3201.9375 1164.7156,3198.8125 Q1164.7156,3195.6875 1166.0281,3194.0313 Q1167.3563,3192.375 1169.8563,3192.375 Q1170.5594,3192.375 1171.2,3192.5313 Q1171.8563,3192.6875 1172.4188,3192.9844 L1172.4188,3195.7031 Q1171.7938,3195.125 1171.2,3194.8594 Q1170.6063,3194.5781 1169.9813,3194.5781 Q1168.6375,3194.5781 1167.95,3195.6563 Q1167.2625,3196.7188 1167.2625,3198.8125 Q1167.2625,3200.9063 1167.95,3201.9844 Q1168.6375,3203.0469 1169.9813,3203.0469 Q1170.6063,3203.0469 1171.2,3202.7813 Q1171.7938,3202.5 1172.4188,3201.9219 L1172.4188,3204.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="58" x="1187.55" y="3203.1543">PssmRow</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1137" x2="1266" y1="3215" y2="3215"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="86" x="1142" y="3229.2104">_conservations</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="119" x="1142" y="3242.0151">_information_content</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="1142" y="3254.8198">conservations</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="113" x="1142" y="3267.6245">information_content</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1137" x2="1266" y1="3274.2188" y2="3274.2188"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="1142" y="3288.4292">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="105" x="1142" y="3301.2339">get_conservation()</text><!--MD5=[7e50862f5e54c339fe7ffef12ff7bbc2]
class structure_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="37.9375" id="structure_py" style="stroke: #A80036; stroke-width: 1.5;" width="110" x="682.5" y="2493.5"/><ellipse cx="697.5" cy="2512.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M693.2188,2506.0781 L696.1406,2506.0781 L697.6094,2511.5156 L699.0781,2506.0781 L702.0156,2506.0781 L702.0156,2518.4688 L699.9063,2518.4688 L699.9063,2508.5469 L698.5938,2513.9688 L696.6563,2513.9688 L695.3281,2508.5469 L695.3281,2518.4688 L693.2188,2518.4688 L693.2188,2506.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="720.5" y="2509.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="78" x="711.5" y="2523.6074">structure_py</text><!--MD5=[91221848cc6fc2b51471cfb300e81a0a]
class Query--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="304.0938" id="Query" style="stroke: #A80036; stroke-width: 1.5;" width="146" x="1698.5" y="932"/><ellipse cx="1749.25" cy="948" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1752.2188,953.6406 Q1751.6406,953.9375 1751,954.0781 Q1750.3594,954.2344 1749.6563,954.2344 Q1747.1563,954.2344 1745.8281,952.5938 Q1744.5156,950.9375 1744.5156,947.8125 Q1744.5156,944.6875 1745.8281,943.0313 Q1747.1563,941.375 1749.6563,941.375 Q1750.3594,941.375 1751,941.5313 Q1751.6563,941.6875 1752.2188,941.9844 L1752.2188,944.7031 Q1751.5938,944.125 1751,943.8594 Q1750.4063,943.5781 1749.7813,943.5781 Q1748.4375,943.5781 1747.75,944.6563 Q1747.0625,945.7188 1747.0625,947.8125 Q1747.0625,949.9063 1747.75,950.9844 Q1748.4375,952.0469 1749.7813,952.0469 Q1750.4063,952.0469 1751,951.7813 Q1751.5938,951.5 1752.2188,950.9219 L1752.2188,953.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="36" x="1769.75" y="952.1543">Query</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1699.5" x2="1843.5" y1="964" y2="964"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="57" x="1704.5" y="978.2104">_model_id</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="92" x="1704.5" y="991.0151">_pssm_required</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="53" x="1704.5" y="1003.8198">chain_ids</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="86" x="1704.5" y="1016.6245">distance_cutoff</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="51" x="1704.5" y="1029.4292">model_id</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="52" x="1704.5" y="1042.2339">pdb_path</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="70" x="1704.5" y="1055.0386">pssm_paths</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="57" x="1704.5" y="1067.8433">resolution</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="134" x="1704.5" y="1080.6479">suppress_pssm_errors</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="41" x="1704.5" y="1093.4526">targets</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="39" x="1704.5" y="1106.2573">variant</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1699.5" x2="1843.5" y1="1112.8516" y2="1112.8516"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="1704.5" y="1127.062">__post_init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="56" x="1704.5" y="1139.8667">__repr__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="1704.5" y="1152.6714">_build_helper()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="84" x="1704.5" y="1165.4761">_check_pssm()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="107" x="1704.5" y="1178.2808">_load_pssm_data()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="96" x="1704.5" y="1191.0854">_load_structure()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="118" x="1704.5" y="1203.8901">_set_graph_targets()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="35" x="1704.5" y="1216.6948">build()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="1704.5" y="1229.4995">get_query_id()</text><!--MD5=[27bfdb9e128171e0e365013b6b91e809]
class Literal--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="Literal" style="stroke: #A80036; stroke-width: 1.5;" width="70" x="1402.5" y="1449"/><ellipse cx="1417.5" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1420.4688,1470.6406 Q1419.8906,1470.9375 1419.25,1471.0781 Q1418.6094,1471.2344 1417.9063,1471.2344 Q1415.4063,1471.2344 1414.0781,1469.5938 Q1412.7656,1467.9375 1412.7656,1464.8125 Q1412.7656,1461.6875 1414.0781,1460.0313 Q1415.4063,1458.375 1417.9063,1458.375 Q1418.6094,1458.375 1419.25,1458.5313 Q1419.9063,1458.6875 1420.4688,1458.9844 L1420.4688,1461.7031 Q1419.8438,1461.125 1419.25,1460.8594 Q1418.6563,1460.5781 1418.0313,1460.5781 Q1416.6875,1460.5781 1416,1461.6563 Q1415.3125,1462.7188 1415.3125,1464.8125 Q1415.3125,1466.9063 1416,1467.9844 Q1416.6875,1469.0469 1418.0313,1469.0469 Q1418.6563,1469.0469 1419.25,1468.7813 Q1419.8438,1468.5 1420.4688,1467.9219 L1420.4688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="38" x="1431.5" y="1469.1543">Literal</text><!--MD5=[ce0bdc9c9d7363fc59409c686ba93793]
class list--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="list" style="stroke: #A80036; stroke-width: 1.5;" width="50" x="1507.5" y="1449"/><ellipse cx="1522.5" cy="1465" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1525.4688,1470.6406 Q1524.8906,1470.9375 1524.25,1471.0781 Q1523.6094,1471.2344 1522.9063,1471.2344 Q1520.4063,1471.2344 1519.0781,1469.5938 Q1517.7656,1467.9375 1517.7656,1464.8125 Q1517.7656,1461.6875 1519.0781,1460.0313 Q1520.4063,1458.375 1522.9063,1458.375 Q1523.6094,1458.375 1524.25,1458.5313 Q1524.9063,1458.6875 1525.4688,1458.9844 L1525.4688,1461.7031 Q1524.8438,1461.125 1524.25,1460.8594 Q1523.6563,1460.5781 1523.0313,1460.5781 Q1521.6875,1460.5781 1521,1461.6563 Q1520.3125,1462.7188 1520.3125,1464.8125 Q1520.3125,1466.9063 1521,1467.9844 Q1521.6875,1469.0469 1523.0313,1469.0469 Q1523.6563,1469.0469 1524.25,1468.7813 Q1524.8438,1468.5 1525.4688,1467.9219 L1525.4688,1470.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="18" x="1536.5" y="1469.1543">list</text><!--MD5=[b8a02e7cefbb6776bc302b9d3e0bbed1]
class SingleResidueVariantQuery--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="188.8516" id="SingleResidueVariantQuery" style="stroke: #A80036; stroke-width: 1.5;" width="201" x="1880" y="989.5"/><ellipse cx="1895" cy="1005.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1897.9688,1011.1406 Q1897.3906,1011.4375 1896.75,1011.5781 Q1896.1094,1011.7344 1895.4063,1011.7344 Q1892.9063,1011.7344 1891.5781,1010.0938 Q1890.2656,1008.4375 1890.2656,1005.3125 Q1890.2656,1002.1875 1891.5781,1000.5313 Q1892.9063,998.875 1895.4063,998.875 Q1896.1094,998.875 1896.75,999.0313 Q1897.4063,999.1875 1897.9688,999.4844 L1897.9688,1002.2031 Q1897.3438,1001.625 1896.75,1001.3594 Q1896.1563,1001.0781 1895.5313,1001.0781 Q1894.1875,1001.0781 1893.5,1002.1563 Q1892.8125,1003.2188 1892.8125,1005.3125 Q1892.8125,1007.4063 1893.5,1008.4844 Q1894.1875,1009.5469 1895.5313,1009.5469 Q1896.1563,1009.5469 1896.75,1009.2813 Q1897.3438,1009 1897.9688,1008.4219 L1897.9688,1011.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="169" x="1909" y="1009.6543">SingleResidueVariantQuery</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1881" x2="2080" y1="1021.5" y2="1021.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="1886" y="1035.7104">insertion_code</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="36" x="1886" y="1048.5151">radius</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="59" x="1886" y="1061.3198">residue_id</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="39" x="1886" y="1074.1245">variant</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="109" x="1886" y="1086.9292">variant_amino_acid</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="91" x="1886" y="1099.7339">variant_chain_id</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="138" x="1886" y="1112.5386">variant_residue_number</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="116" x="1886" y="1125.3433">wildtype_amino_acid</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1881" x2="2080" y1="1131.9375" y2="1131.9375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="1886" y="1146.1479">__post_init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="1886" y="1158.9526">_build_helper()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="1886" y="1171.7573">get_query_id()</text><!--MD5=[d61d23a7fb504d257d89803d4827e3bc]
class ProteinProteinInterfaceQuery--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="78.4141" id="ProteinProteinInterfaceQuery" style="stroke: #A80036; stroke-width: 1.5;" width="214" x="5778.5" y="1045"/><ellipse cx="5793.5" cy="1061" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5796.4688,1066.6406 Q5795.8906,1066.9375 5795.25,1067.0781 Q5794.6094,1067.2344 5793.9063,1067.2344 Q5791.4063,1067.2344 5790.0781,1065.5938 Q5788.7656,1063.9375 5788.7656,1060.8125 Q5788.7656,1057.6875 5790.0781,1056.0313 Q5791.4063,1054.375 5793.9063,1054.375 Q5794.6094,1054.375 5795.25,1054.5313 Q5795.9063,1054.6875 5796.4688,1054.9844 L5796.4688,1057.7031 Q5795.8438,1057.125 5795.25,1056.8594 Q5794.6563,1056.5781 5794.0313,1056.5781 Q5792.6875,1056.5781 5792,1057.6563 Q5791.3125,1058.7188 5791.3125,1060.8125 Q5791.3125,1062.9063 5792,1063.9844 Q5792.6875,1065.0469 5794.0313,1065.0469 Q5794.6563,1065.0469 5795.25,1064.7813 Q5795.8438,1064.5 5796.4688,1063.9219 L5796.4688,1066.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="182" x="5807.5" y="1065.1543">ProteinProteinInterfaceQuery</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5779.5" x2="5991.5" y1="1077" y2="1077"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="5784.5" y="1091.2104">__post_init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="5784.5" y="1104.0151">_build_helper()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="5784.5" y="1116.8198">get_query_id()</text><!--MD5=[79d6752fdfd791214c25758bde8b3769]
class QueryCollection--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="278.4844" id="QueryCollection" style="stroke: #A80036; stroke-width: 1.5;" width="161" x="2707" y="411.5"/><ellipse cx="2736.4" cy="427.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2739.3688,433.1406 Q2738.7906,433.4375 2738.15,433.5781 Q2737.5094,433.7344 2736.8063,433.7344 Q2734.3063,433.7344 2732.9781,432.0938 Q2731.6656,430.4375 2731.6656,427.3125 Q2731.6656,424.1875 2732.9781,422.5313 Q2734.3063,420.875 2736.8063,420.875 Q2737.5094,420.875 2738.15,421.0313 Q2738.8063,421.1875 2739.3688,421.4844 L2739.3688,424.2031 Q2738.7438,423.625 2738.15,423.3594 Q2737.5563,423.0781 2736.9313,423.0781 Q2735.5875,423.0781 2734.9,424.1563 Q2734.2125,425.2188 2734.2125,427.3125 Q2734.2125,429.4063 2734.9,430.4844 Q2735.5875,431.5469 2736.9313,431.5469 Q2737.5563,431.5469 2738.15,431.2813 Q2738.7438,431 2739.3688,430.4219 L2739.3688,433.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="97" x="2753.6" y="431.6543">QueryCollection</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2708" x2="2867" y1="443.5" y2="443.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="63" x="2713" y="457.7104">_cpu_count</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="102" x="2713" y="470.5151">_feature_modules</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="149" x="2713" y="483.3198">_grid_augmentation_count</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="108" x="2713" y="496.1245">_grid_map_method</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="2713" y="508.9292">_grid_settings</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="60" x="2713" y="521.7339">_ids_count</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="38" x="2713" y="534.5386">_prefix</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="2713" y="547.3433">_queries</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="43" x="2713" y="560.1479">queries</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2708" x2="2867" y1="566.7422" y2="566.7422"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="2713" y="580.9526">__contains__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="2713" y="593.7573">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="51" x="2713" y="606.562">__iter__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="2713" y="619.3667">__len__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="125" x="2713" y="632.1714">_process_one_query()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="134" x="2713" y="644.9761">_set_feature_modules()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="29" x="2713" y="657.7808">add()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="70" x="2713" y="670.5854">export_dict()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="54" x="2713" y="683.3901">process()</text><!--MD5=[e50b7a5d3eb927072e8133973812bb6b]
class query_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="71.5469" id="query_py" style="stroke: #A80036; stroke-width: 1.5;" width="129" x="2723" y="52.5"/><ellipse cx="2756.45" cy="71.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2752.1688,65.0781 L2755.0906,65.0781 L2756.5594,70.5156 L2758.0281,65.0781 L2760.9656,65.0781 L2760.9656,77.4688 L2758.8563,77.4688 L2758.8563,67.5469 L2757.5438,72.9688 L2755.6063,72.9688 L2754.2781,67.5469 L2754.2781,77.4688 L2752.1688,77.4688 L2752.1688,65.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="2772.55" y="68.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="55" x="2775.05" y="82.6074">query_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2724" x2="2851" y1="90.4375" y2="90.4375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="117" x="2729" y="104.6479">VALID_RESOLUTIONS</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="23" x="2729" y="117.4526">_log</text><!--MD5=[1fd0a1e3bd9c38cbad86acc6f1d358ef]
class target_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="79.5469" id="target_py" style="stroke: #A80036; stroke-width: 1.5;" width="137" x="6052" y="1844.5"/><ellipse cx="6087.7" cy="1863.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6083.4188,1857.0781 L6086.3406,1857.0781 L6087.8094,1862.5156 L6089.2781,1857.0781 L6092.2156,1857.0781 L6092.2156,1869.4688 L6090.1063,1869.4688 L6090.1063,1859.5469 L6088.7938,1864.9688 L6086.8563,1864.9688 L6085.5281,1859.5469 L6085.5281,1869.4688 L6083.4188,1869.4688 L6083.4188,1857.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="6105.8" y="1860.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="59" x="6106.3" y="1874.6074">target_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="6053" x2="6188" y1="1882.4375" y2="1882.4375"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="6053" x2="6188" y1="1890.4375" y2="1890.4375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="69" x="6058" y="1904.6479">add_target()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="125" x="6058" y="1917.4526">compute_ppi_scores()</text><!--MD5=[2e910cfab5953558a37be69a39e8d569]
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class buildgraph_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="169.1797" id="buildgraph_py" style="stroke: #A80036; stroke-width: 1.5;" width="188" x="882.5" y="999.5"/><ellipse cx="928.75" cy="1018.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M924.4688,1012.0781 L927.3906,1012.0781 L928.8594,1017.5156 L930.3281,1012.0781 L933.2656,1012.0781 L933.2656,1024.4688 L931.1563,1024.4688 L931.1563,1014.5469 L929.8438,1019.9688 L927.9063,1019.9688 L926.5781,1014.5469 L926.5781,1024.4688 L924.4688,1024.4688 L924.4688,1012.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="962.75" y="1015.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="87" x="949.25" y="1029.6074">buildgraph_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="883.5" x2="1069.5" y1="1037.4375" y2="1037.4375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="129" x="888.5" y="1051.6479">_amino_acids_by_code</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="116" x="888.5" y="1064.4526">_elements_by_name</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="23" x="888.5" y="1077.2573">_log</text><line style="stroke: #A80036; stroke-width: 1.0;" x1="883.5" x2="1069.5" y1="1083.8516" y2="1083.8516"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="176" x="888.5" y="1098.062">_add_atom_data_to_structure()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="136" x="888.5" y="1110.8667">_add_atom_to_residue()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="115" x="888.5" y="1123.6714">get_contact_atoms()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="157" x="888.5" y="1136.4761">get_residue_contact_pairs()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="84" x="888.5" y="1149.2808">get_structure()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="157" x="888.5" y="1162.0854">get_surrounding_residues()</text><!--MD5=[2e2f8c8f62c4eb3bc59a59727cfd81a5]
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class graph_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="92.3516" id="graph_py" style="stroke: #A80036; stroke-width: 1.5;" width="135" x="3943" y="1038"/><ellipse cx="3978.7" cy="1056.9688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M3974.4188,1050.5781 L3977.3406,1050.5781 L3978.8094,1056.0156 L3980.2781,1050.5781 L3983.2156,1050.5781 L3983.2156,1062.9688 L3981.1063,1062.9688 L3981.1063,1053.0469 L3979.7938,1058.4688 L3977.8563,1058.4688 L3976.5281,1053.0469 L3976.5281,1062.9688 L3974.4188,1062.9688 L3974.4188,1050.5781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="3995.8" y="1054.1387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="57" x="3997.3" y="1068.1074">graph_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="3944" x2="4077" y1="1075.9375" y2="1075.9375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="23" x="3949" y="1090.1479">_log</text><line style="stroke: #A80036; stroke-width: 1.0;" x1="3944" x2="4077" y1="1096.7422" y2="1096.7422"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="118" x="3949" y="1110.9526">build_atomic_graph()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="123" x="3949" y="1123.7573">build_residue_graph()</text><!--MD5=[62dc721b08c6799b4351b4dbb55b988b]
class Augmentation--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="112.0234" id="Augmentation" style="stroke: #A80036; stroke-width: 1.5;" width="120" x="5750.5" y="1409"/><ellipse cx="5765.5" cy="1425" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5768.4688,1430.6406 Q5767.8906,1430.9375 5767.25,1431.0781 Q5766.6094,1431.2344 5765.9063,1431.2344 Q5763.4063,1431.2344 5762.0781,1429.5938 Q5760.7656,1427.9375 5760.7656,1424.8125 Q5760.7656,1421.6875 5762.0781,1420.0313 Q5763.4063,1418.375 5765.9063,1418.375 Q5766.6094,1418.375 5767.25,1418.5313 Q5767.9063,1418.6875 5768.4688,1418.9844 L5768.4688,1421.7031 Q5767.8438,1421.125 5767.25,1420.8594 Q5766.6563,1420.5781 5766.0313,1420.5781 Q5764.6875,1420.5781 5764,1421.6563 Q5763.3125,1422.7188 5763.3125,1424.8125 Q5763.3125,1426.9063 5764,1427.9844 Q5764.6875,1429.0469 5766.0313,1429.0469 Q5766.6563,1429.0469 5767.25,1428.7813 Q5767.8438,1428.5 5768.4688,1427.9219 L5768.4688,1430.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="88" x="5779.5" y="1429.1543">Augmentation</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5751.5" x2="5869.5" y1="1441" y2="1441"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="37" x="5756.5" y="1455.2104">_angle</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="29" x="5756.5" y="1468.0151">_axis</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="31" x="5756.5" y="1480.8198">angle</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="23" x="5756.5" y="1493.6245">axis</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5751.5" x2="5869.5" y1="1500.2188" y2="1500.2188"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="5756.5" y="1514.4292">__init__()</text><!--MD5=[1d8fd41a86194f1577beeb7fe29fe480]
class grid_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="58.7422" id="grid_py" style="stroke: #A80036; stroke-width: 1.5;" width="88" x="5655.5" y="1054.5"/><ellipse cx="5670.5" cy="1073.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5666.2188,1067.0781 L5669.1406,1067.0781 L5670.6094,1072.5156 L5672.0781,1067.0781 L5675.0156,1067.0781 L5675.0156,1079.4688 L5672.9063,1079.4688 L5672.9063,1069.5469 L5671.5938,1074.9688 L5669.6563,1074.9688 L5668.3281,1069.5469 L5668.3281,1079.4688 L5666.2188,1079.4688 L5666.2188,1067.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="5682.5" y="1070.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="44" x="5690.5" y="1084.6074">grid_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5656.5" x2="5742.5" y1="1092.4375" y2="1092.4375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="23" x="5661.5" y="1106.6479">_log</text><!--MD5=[5b7f95e46f9891e4dc5fabba74eba033]
class AtomicForcefield--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="150.4375" id="AtomicForcefield" style="stroke: #A80036; stroke-width: 1.5;" width="190" x="2405.5" y="1390"/><ellipse cx="2445.25" cy="1406" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M2448.2188,1411.6406 Q2447.6406,1411.9375 2447,1412.0781 Q2446.3594,1412.2344 2445.6563,1412.2344 Q2443.1563,1412.2344 2441.8281,1410.5938 Q2440.5156,1408.9375 2440.5156,1405.8125 Q2440.5156,1402.6875 2441.8281,1401.0313 Q2443.1563,1399.375 2445.6563,1399.375 Q2446.3594,1399.375 2447,1399.5313 Q2447.6563,1399.6875 2448.2188,1399.9844 L2448.2188,1402.7031 Q2447.5938,1402.125 2447,1401.8594 Q2446.4063,1401.5781 2445.7813,1401.5781 Q2444.4375,1401.5781 2443.75,1402.6563 Q2443.0625,1403.7188 2443.0625,1405.8125 Q2443.0625,1407.9063 2443.75,1408.9844 Q2444.4375,1410.0469 2445.7813,1410.0469 Q2446.4063,1410.0469 2447,1409.7813 Q2447.5938,1409.5 2448.2188,1408.9219 L2448.2188,1411.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="103" x="2464.75" y="1410.1543">AtomicForcefield</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2406.5" x2="2594.5" y1="1422" y2="1422"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="84" x="2411.5" y="1436.2104">_patch_actions</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="131" x="2411.5" y="1449.0151">_residue_class_criteria</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="58" x="2411.5" y="1461.8198">_top_rows</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="151" x="2411.5" y="1474.6245">_vanderwaals_parameters</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="2406.5" x2="2594.5" y1="1481.2188" y2="1481.2188"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="2411.5" y="1495.4292">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="178" x="2411.5" y="1508.2339">_find_matching_residue_class()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="71" x="2411.5" y="1521.0386">get_charge()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="177" x="2411.5" y="1533.8433">get_vanderwaals_parameters()</text><!--MD5=[50b893fa24d52cb749162f551b5dcbf2]
class PatchActionType--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="65.6094" id="PatchActionType" style="stroke: #A80036; stroke-width: 1.5;" width="136" x="6299.5" y="2188"/><ellipse cx="6314.5" cy="2204" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6317.4688,2209.6406 Q6316.8906,2209.9375 6316.25,2210.0781 Q6315.6094,2210.2344 6314.9063,2210.2344 Q6312.4063,2210.2344 6311.0781,2208.5938 Q6309.7656,2206.9375 6309.7656,2203.8125 Q6309.7656,2200.6875 6311.0781,2199.0313 Q6312.4063,2197.375 6314.9063,2197.375 Q6315.6094,2197.375 6316.25,2197.5313 Q6316.9063,2197.6875 6317.4688,2197.9844 L6317.4688,2200.7031 Q6316.8438,2200.125 6316.25,2199.8594 Q6315.6563,2199.5781 6315.0313,2199.5781 Q6313.6875,2199.5781 6313,2200.6563 Q6312.3125,2201.7188 6312.3125,2203.8125 Q6312.3125,2205.9063 6313,2206.9844 Q6313.6875,2208.0469 6315.0313,2208.0469 Q6315.6563,2208.0469 6316.25,2207.7813 Q6316.8438,2207.5 6317.4688,2206.9219 L6317.4688,2209.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="104" x="6328.5" y="2208.1543">PatchActionType</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="6300.5" x2="6434.5" y1="2220" y2="2220"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="23" x="6305.5" y="2234.2104">ADD</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="42" x="6305.5" y="2247.0151">MODIFY</text><!--MD5=[917f2cb401f6eeb8c49197e2f8bacb8d]
class PatchSelection--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="86.4141" id="PatchSelection" style="stroke: #A80036; stroke-width: 1.5;" width="126" x="6523.5" y="2469.5"/><ellipse cx="6538.5" cy="2485.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6541.4688,2491.1406 Q6540.8906,2491.4375 6540.25,2491.5781 Q6539.6094,2491.7344 6538.9063,2491.7344 Q6536.4063,2491.7344 6535.0781,2490.0938 Q6533.7656,2488.4375 6533.7656,2485.3125 Q6533.7656,2482.1875 6535.0781,2480.5313 Q6536.4063,2478.875 6538.9063,2478.875 Q6539.6094,2478.875 6540.25,2479.0313 Q6540.9063,2479.1875 6541.4688,2479.4844 L6541.4688,2482.2031 Q6540.8438,2481.625 6540.25,2481.3594 Q6539.6563,2481.0781 6539.0313,2481.0781 Q6537.6875,2481.0781 6537,2482.1563 Q6536.3125,2483.2188 6536.3125,2485.3125 Q6536.3125,2487.4063 6537,2488.4844 Q6537.6875,2489.5469 6539.0313,2489.5469 Q6539.6563,2489.5469 6540.25,2489.2813 Q6540.8438,2489 6541.4688,2488.4219 L6541.4688,2491.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="94" x="6552.5" y="2489.6543">PatchSelection</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="6524.5" x2="6648.5" y1="2501.5" y2="2501.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="67" x="6529.5" y="2515.7104">atom_name</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="73" x="6529.5" y="2528.5151">residue_type</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="6524.5" x2="6648.5" y1="2535.1094" y2="2535.1094"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="6529.5" y="2549.3198">__init__()</text><!--MD5=[0336c458b9901a235be0eec8c2cf9620]
class PatchAction--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="124.8281" id="PatchAction" style="stroke: #A80036; stroke-width: 1.5;" width="107" x="6471" y="2158.5"/><ellipse cx="6486" cy="2174.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6488.9688,2180.1406 Q6488.3906,2180.4375 6487.75,2180.5781 Q6487.1094,2180.7344 6486.4063,2180.7344 Q6483.9063,2180.7344 6482.5781,2179.0938 Q6481.2656,2177.4375 6481.2656,2174.3125 Q6481.2656,2171.1875 6482.5781,2169.5313 Q6483.9063,2167.875 6486.4063,2167.875 Q6487.1094,2167.875 6487.75,2168.0313 Q6488.4063,2168.1875 6488.9688,2168.4844 L6488.9688,2171.2031 Q6488.3438,2170.625 6487.75,2170.3594 Q6487.1563,2170.0781 6486.5313,2170.0781 Q6485.1875,2170.0781 6484.5,2171.1563 Q6483.8125,2172.2188 6483.8125,2174.3125 Q6483.8125,2176.4063 6484.5,2177.4844 Q6485.1875,2178.5469 6486.5313,2178.5469 Q6487.1563,2178.5469 6487.75,2178.2813 Q6488.3438,2178 6488.9688,2177.4219 L6488.9688,2180.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="75" x="6500" y="2178.6543">PatchAction</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="6472" x2="6577" y1="2190.5" y2="2190.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="41" x="6477" y="2204.7104">kwargs</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="51" x="6477" y="2217.5151">selection</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="24" x="6477" y="2230.3198">type</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="6472" x2="6577" y1="2236.9141" y2="2236.9141"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="6477" y="2251.1245">__contains__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="75" x="6477" y="2263.9292">__getitem__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="6477" y="2276.7339">__init__()</text><!--MD5=[757ed0183f8519debfb7e592cddfbb0a]
class PatchParser--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="112.0234" id="PatchParser" style="stroke: #A80036; stroke-width: 1.5;" width="142" x="6752.5" y="2165"/><ellipse cx="6782.35" cy="2181" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6785.3188,2186.6406 Q6784.7406,2186.9375 6784.1,2187.0781 Q6783.4594,2187.2344 6782.7563,2187.2344 Q6780.2563,2187.2344 6778.9281,2185.5938 Q6777.6156,2183.9375 6777.6156,2180.8125 Q6777.6156,2177.6875 6778.9281,2176.0313 Q6780.2563,2174.375 6782.7563,2174.375 Q6783.4594,2174.375 6784.1,2174.5313 Q6784.7563,2174.6875 6785.3188,2174.9844 L6785.3188,2177.7031 Q6784.6938,2177.125 6784.1,2176.8594 Q6783.5063,2176.5781 6782.8813,2176.5781 Q6781.5375,2176.5781 6780.85,2177.6563 Q6780.1625,2178.7188 6780.1625,2180.8125 Q6780.1625,2182.9063 6780.85,2183.9844 Q6781.5375,2185.0469 6782.8813,2185.0469 Q6783.5063,2185.0469 6784.1,2184.7813 Q6784.6938,2184.5 6785.3188,2183.9219 L6785.3188,2186.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="77" x="6799.65" y="2185.1543">PatchParser</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="6753.5" x2="6893.5" y1="2197" y2="2197"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="98" x="6758.5" y="2211.2104">ACTION_PATTERN</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="130" x="6758.5" y="2224.0151">NUMBER_VAR_PATTERN</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="125" x="6758.5" y="2236.8198">STRING_VAR_PATTERN</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="6753.5" x2="6893.5" y1="2243.4141" y2="2243.4141"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="117" x="6758.5" y="2257.6245">_parse_action_type()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="41" x="6758.5" y="2270.4292">parse()</text><!--MD5=[947c3b9be5eb0d12ca37b53ec4f36150]
class patch_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="37.9375" id="patch_py" style="stroke: #A80036; stroke-width: 1.5;" width="88" x="6542.5" y="1865.5"/><ellipse cx="6557.5" cy="1884.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6553.2188,1878.0781 L6556.1406,1878.0781 L6557.6094,1883.5156 L6559.0781,1878.0781 L6562.0156,1878.0781 L6562.0156,1890.4688 L6559.9063,1890.4688 L6559.9063,1880.5469 L6558.5938,1885.9688 L6556.6563,1885.9688 L6555.3281,1880.5469 L6555.3281,1890.4688 L6553.2188,1890.4688 L6553.2188,1878.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="6569.5" y="1881.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="56" x="6571.5" y="1895.6074">patch_py</text><!--MD5=[ddde3c1790cd74eb3dcf3fe099562f1c]
class pssm_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="66.7422" id="pssm_py" style="stroke: #A80036; stroke-width: 1.5;" width="91" x="912" y="2187.5"/><ellipse cx="928.35" cy="2206.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M924.0688,2200.0781 L926.9906,2200.0781 L928.4594,2205.5156 L929.9281,2200.0781 L932.8656,2200.0781 L932.8656,2212.4688 L930.7563,2212.4688 L930.7563,2202.5469 L929.4438,2207.9688 L927.5063,2207.9688 L926.1781,2202.5469 L926.1781,2212.4688 L924.0688,2212.4688 L924.0688,2200.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="940.65" y="2203.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="53" x="944.15" y="2217.6074">pssm_py</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="913" x2="1002" y1="2225.4375" y2="2225.4375"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="913" x2="1002" y1="2233.4375" y2="2233.4375"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="79" x="918" y="2247.6479">parse_pssm()</text><!--MD5=[a57d9bc8e91d023abb3dd4121759fdc9]
class TextIO--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="32" id="TextIO" style="stroke: #A80036; stroke-width: 1.5;" width="70" x="898.5" y="2496.5"/><ellipse cx="913.5" cy="2512.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M916.4688,2518.1406 Q915.8906,2518.4375 915.25,2518.5781 Q914.6094,2518.7344 913.9063,2518.7344 Q911.4063,2518.7344 910.0781,2517.0938 Q908.7656,2515.4375 908.7656,2512.3125 Q908.7656,2509.1875 910.0781,2507.5313 Q911.4063,2505.875 913.9063,2505.875 Q914.6094,2505.875 915.25,2506.0313 Q915.9063,2506.1875 916.4688,2506.4844 L916.4688,2509.2031 Q915.8438,2508.625 915.25,2508.3594 Q914.6563,2508.0781 914.0313,2508.0781 Q912.6875,2508.0781 912,2509.1563 Q911.3125,2510.2188 911.3125,2512.3125 Q911.3125,2514.4063 912,2515.4844 Q912.6875,2516.5469 914.0313,2516.5469 Q914.6563,2516.5469 915.25,2516.2813 Q915.8438,2516 916.4688,2515.4219 L916.4688,2518.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="38" x="927.5" y="2516.6543">TextIO</text><!--MD5=[aa6ceb06e4a7a16b1751076f4cc56622]
class ResidueClassCriterium--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="124.8281" id="ResidueClassCriterium" style="stroke: #A80036; stroke-width: 1.5;" width="171" x="1453" y="2158.5"/><ellipse cx="1468" cy="2174.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1470.9688,2180.1406 Q1470.3906,2180.4375 1469.75,2180.5781 Q1469.1094,2180.7344 1468.4063,2180.7344 Q1465.9063,2180.7344 1464.5781,2179.0938 Q1463.2656,2177.4375 1463.2656,2174.3125 Q1463.2656,2171.1875 1464.5781,2169.5313 Q1465.9063,2167.875 1468.4063,2167.875 Q1469.1094,2167.875 1469.75,2168.0313 Q1470.4063,2168.1875 1470.9688,2168.4844 L1470.9688,2171.2031 Q1470.3438,2170.625 1469.75,2170.3594 Q1469.1563,2170.0781 1468.5313,2170.0781 Q1467.1875,2170.0781 1466.5,2171.1563 Q1465.8125,2172.2188 1465.8125,2174.3125 Q1465.8125,2176.4063 1466.5,2177.4844 Q1467.1875,2178.5469 1468.5313,2178.5469 Q1469.1563,2178.5469 1469.75,2178.2813 Q1470.3438,2178 1470.9688,2177.4219 L1470.9688,2180.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="139" x="1482" y="2178.6543">ResidueClassCriterium</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1454" x2="1623" y1="2190.5" y2="2190.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="119" x="1459" y="2204.7104">absent_atom_names</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="109" x="1459" y="2217.5151">amino_acid_names</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="68" x="1459" y="2230.3198">class_name</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="124" x="1459" y="2243.1245">present_atom_names</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1454" x2="1623" y1="2249.7188" y2="2249.7188"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="1459" y="2263.9292">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="57" x="1459" y="2276.7339">matches()</text><!--MD5=[76f11e84831b828871bce4be1627a989]
class ResidueClassParser--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="99.2188" id="ResidueClassParser" style="stroke: #A80036; stroke-width: 1.5;" width="168" x="1659.5" y="2171.5"/><ellipse cx="1679.9" cy="2187.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1682.8688,2193.1406 Q1682.2906,2193.4375 1681.65,2193.5781 Q1681.0094,2193.7344 1680.3063,2193.7344 Q1677.8063,2193.7344 1676.4781,2192.0938 Q1675.1656,2190.4375 1675.1656,2187.3125 Q1675.1656,2184.1875 1676.4781,2182.5313 Q1677.8063,2180.875 1680.3063,2180.875 Q1681.0094,2180.875 1681.65,2181.0313 Q1682.3063,2181.1875 1682.8688,2181.4844 L1682.8688,2184.2031 Q1682.2438,2183.625 1681.65,2183.3594 Q1681.0563,2183.0781 1680.4313,2183.0781 Q1679.0875,2183.0781 1678.4,2184.1563 Q1677.7125,2185.2188 1677.7125,2187.3125 Q1677.7125,2189.4063 1678.4,2190.4844 Q1679.0875,2191.5469 1680.4313,2191.5469 Q1681.0563,2191.5469 1681.65,2191.2813 Q1682.2438,2191 1682.8688,2190.4219 L1682.8688,2193.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="124" x="1695.1" y="2191.6543">ResidueClassParser</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1660.5" x2="1826.5" y1="2203.5" y2="2203.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="156" x="1665.5" y="2217.7104">_RESIDUE_ATOMS_PATTERN</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="153" x="1665.5" y="2230.5151">_RESIDUE_CLASS_PATTERN</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1660.5" x2="1826.5" y1="2237.1094" y2="2237.1094"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="124" x="1665.5" y="2251.3198">_parse_amino_acids()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="41" x="1665.5" y="2264.1245">parse()</text><!--MD5=[34b126bec41e973c2e5ec44162e8b742]
class TopRowObject--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="112.0234" id="TopRowObject" style="stroke: #A80036; stroke-width: 1.5;" width="120" x="5490.5" y="494.5"/><ellipse cx="5505.5" cy="510.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5508.4688,516.1406 Q5507.8906,516.4375 5507.25,516.5781 Q5506.6094,516.7344 5505.9063,516.7344 Q5503.4063,516.7344 5502.0781,515.0938 Q5500.7656,513.4375 5500.7656,510.3125 Q5500.7656,507.1875 5502.0781,505.5313 Q5503.4063,503.875 5505.9063,503.875 Q5506.6094,503.875 5507.25,504.0313 Q5507.9063,504.1875 5508.4688,504.4844 L5508.4688,507.2031 Q5507.8438,506.625 5507.25,506.3594 Q5506.6563,506.0781 5506.0313,506.0781 Q5504.6875,506.0781 5504,507.1563 Q5503.3125,508.2188 5503.3125,510.3125 Q5503.3125,512.4063 5504,513.4844 Q5504.6875,514.5469 5506.0313,514.5469 Q5506.6563,514.5469 5507.25,514.2813 Q5507.8438,514 5508.4688,513.4219 L5508.4688,516.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="88" x="5519.5" y="514.6543">TopRowObject</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5491.5" x2="5609.5" y1="526.5" y2="526.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="67" x="5496.5" y="540.7104">atom_name</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="41" x="5496.5" y="553.5151">kwargs</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="81" x="5496.5" y="566.3198">residue_name</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5491.5" x2="5609.5" y1="572.9141" y2="572.9141"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="75" x="5496.5" y="587.1245">__getitem__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="5496.5" y="599.9292">__init__()</text><!--MD5=[02ab41c4d7b554e16885561c45b00170]
class TopParser--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="112.0234" id="TopParser" style="stroke: #A80036; stroke-width: 1.5;" width="121" x="5646" y="494.5"/><ellipse cx="5672.25" cy="510.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5675.2188,516.1406 Q5674.6406,516.4375 5674,516.5781 Q5673.3594,516.7344 5672.6563,516.7344 Q5670.1563,516.7344 5668.8281,515.0938 Q5667.5156,513.4375 5667.5156,510.3125 Q5667.5156,507.1875 5668.8281,505.5313 Q5670.1563,503.875 5672.6563,503.875 Q5673.3594,503.875 5674,504.0313 Q5674.6563,504.1875 5675.2188,504.4844 L5675.2188,507.2031 Q5674.5938,506.625 5674,506.3594 Q5673.4063,506.0781 5672.7813,506.0781 Q5671.4375,506.0781 5670.75,507.1563 Q5670.0625,508.2188 5670.0625,510.3125 Q5670.0625,512.4063 5670.75,513.4844 Q5671.4375,514.5469 5672.7813,514.5469 Q5673.4063,514.5469 5674,514.2813 Q5674.5938,514 5675.2188,513.4219 L5675.2188,516.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="64" x="5688.75" y="514.6543">TopParser</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5647" x2="5766" y1="526.5" y2="526.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="86" x="5652" y="540.7104">_LINE_PATTERN</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="109" x="5652" y="553.5151">_NUMBER_PATTERN</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="5652" y="566.3198">_VAR_PATTERN</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5647" x2="5766" y1="572.9141" y2="572.9141"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="83" x="5652" y="587.1245">_parse_value()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="41" x="5652" y="599.9292">parse()</text><!--MD5=[da4752d5bf4f0752ddd825f9de44fbde]
class top_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="37.9375" id="top_py" style="stroke: #A80036; stroke-width: 1.5;" width="88" x="5584.5" y="69.5"/><ellipse cx="5599.5" cy="88.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5595.2188,82.0781 L5598.1406,82.0781 L5599.6094,87.5156 L5601.0781,82.0781 L5604.0156,82.0781 L5604.0156,94.4688 L5601.9063,94.4688 L5601.9063,84.5469 L5600.5938,89.9688 L5598.6563,89.9688 L5597.3281,84.5469 L5597.3281,94.4688 L5595.2188,94.4688 L5595.2188,82.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="5611.5" y="85.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="41" x="5621" y="99.6074">top_py</text><!--MD5=[a0616384723cb7367d0ab43cac4c39b7]
class VanderwaalsParam--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="124.8281" id="VanderwaalsParam" style="stroke: #A80036; stroke-width: 1.5;" width="152" x="5802.5" y="488"/><ellipse cx="5817.5" cy="504" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5820.4688,509.6406 Q5819.8906,509.9375 5819.25,510.0781 Q5818.6094,510.2344 5817.9063,510.2344 Q5815.4063,510.2344 5814.0781,508.5938 Q5812.7656,506.9375 5812.7656,503.8125 Q5812.7656,500.6875 5814.0781,499.0313 Q5815.4063,497.375 5817.9063,497.375 Q5818.6094,497.375 5819.25,497.5313 Q5819.9063,497.6875 5820.4688,497.9844 L5820.4688,500.7031 Q5819.8438,500.125 5819.25,499.8594 Q5818.6563,499.5781 5818.0313,499.5781 Q5816.6875,499.5781 5816,500.6563 Q5815.3125,501.7188 5815.3125,503.8125 Q5815.3125,505.9063 5816,506.9844 Q5816.6875,508.0469 5818.0313,508.0469 Q5818.6563,508.0469 5819.25,507.7813 Q5819.8438,507.5 5820.4688,506.9219 L5820.4688,509.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="120" x="5831.5" y="508.1543">VanderwaalsParam</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5803.5" x2="5953.5" y1="520" y2="520"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="61" x="5808.5" y="534.2104">epsilon_14</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="75" x="5808.5" y="547.0151">epsilon_main</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="55" x="5808.5" y="559.8198">sigma_14</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="69" x="5808.5" y="572.6245">sigma_main</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5803.5" x2="5953.5" y1="579.2188" y2="579.2188"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="5808.5" y="593.4292">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="48" x="5808.5" y="606.2339">__str__()</text><!--MD5=[e72ac471247ca91a8024e6f0e5914b81]
class ParamParser--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="52.8047" id="ParamParser" style="stroke: #A80036; stroke-width: 1.5;" width="113" x="5990" y="524"/><ellipse cx="6005" cy="540" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M6007.9688,545.6406 Q6007.3906,545.9375 6006.75,546.0781 Q6006.1094,546.2344 6005.4063,546.2344 Q6002.9063,546.2344 6001.5781,544.5938 Q6000.2656,542.9375 6000.2656,539.8125 Q6000.2656,536.6875 6001.5781,535.0313 Q6002.9063,533.375 6005.4063,533.375 Q6006.1094,533.375 6006.75,533.5313 Q6007.4063,533.6875 6007.9688,533.9844 L6007.9688,536.7031 Q6007.3438,536.125 6006.75,535.8594 Q6006.1563,535.5781 6005.5313,535.5781 Q6004.1875,535.5781 6003.5,536.6563 Q6002.8125,537.7188 6002.8125,539.8125 Q6002.8125,541.9063 6003.5,542.9844 Q6004.1875,544.0469 6005.5313,544.0469 Q6006.1563,544.0469 6006.75,543.7813 Q6007.3438,543.5 6007.9688,542.9219 L6007.9688,545.6406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="81" x="6019" y="544.1543">ParamParser</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="5991" x2="6102" y1="556" y2="556"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="41" x="5996" y="570.2104">parse()</text><!--MD5=[34d036f95cab05314e7558dd5fd652b4]
class vdwparam_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="37.9375" id="vdwparam_py" style="stroke: #A80036; stroke-width: 1.5;" width="115" x="5905" y="69.5"/><ellipse cx="5920" cy="88.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M5915.7188,82.0781 L5918.6406,82.0781 L5920.1094,87.5156 L5921.5781,82.0781 L5924.5156,82.0781 L5924.5156,94.4688 L5922.4063,94.4688 L5922.4063,84.5469 L5921.0938,89.9688 L5919.1563,89.9688 L5917.8281,84.5469 L5917.8281,94.4688 L5915.7188,94.4688 L5915.7188,82.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="5945.5" y="85.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="83" x="5934" y="99.6074">vdwparam_py</text><!--MD5=[9591b16ea3066d230dc9d5687551480b]
class PssmTable--><rect fill="#FEFECE" filter="url(#f1rngaptnu42c4)" height="112.0234" id="PssmTable" style="stroke: #A80036; stroke-width: 1.5;" width="99" x="1305" y="3189.5"/><ellipse cx="1320" cy="3205.5" fill="#ADD1B2" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1322.9688,3211.1406 Q1322.3906,3211.4375 1321.75,3211.5781 Q1321.1094,3211.7344 1320.4063,3211.7344 Q1317.9063,3211.7344 1316.5781,3210.0938 Q1315.2656,3208.4375 1315.2656,3205.3125 Q1315.2656,3202.1875 1316.5781,3200.5313 Q1317.9063,3198.875 1320.4063,3198.875 Q1321.1094,3198.875 1321.75,3199.0313 Q1322.4063,3199.1875 1322.9688,3199.4844 L1322.9688,3202.2031 Q1322.3438,3201.625 1321.75,3201.3594 Q1321.1563,3201.0781 1320.5313,3201.0781 Q1319.1875,3201.0781 1318.5,3202.1563 Q1317.8125,3203.2188 1317.8125,3205.3125 Q1317.8125,3207.4063 1318.5,3208.4844 Q1319.1875,3209.5469 1320.5313,3209.5469 Q1321.1563,3209.5469 1321.75,3209.2813 Q1322.3438,3209 1322.9688,3208.4219 L1322.9688,3211.1406 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="67" x="1334" y="3209.6543">PssmTable</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1306" x2="1403" y1="3221.5" y2="3221.5"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="34" x="1311" y="3235.7104">_rows</text><line style="stroke: #A80036; stroke-width: 1.5;" x1="1306" x2="1403" y1="3242.3047" y2="3242.3047"/><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="80" x="1311" y="3256.5151">__contains__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="75" x="1311" y="3269.3198">__getitem__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="49" x="1311" y="3282.1245">__init__()</text><text fill="#000000" font-family="sans-serif" font-size="11" lengthAdjust="spacingAndGlyphs" textLength="47" x="1311" y="3294.9292">update()</text><!--MD5=[e4216c7ac27f38532088fcebf42c6105]
class pssmdata_py--><rect fill="#8FBC8F" filter="url(#f1rngaptnu42c4)" height="37.9375" id="pssmdata_py" style="stroke: #A80036; stroke-width: 1.5;" width="114" x="1270.5" y="2842.5"/><ellipse cx="1285.5" cy="2861.4688" fill="#DA70D6" rx="11" ry="11" style="stroke: #A80036; stroke-width: 1.0;"/><path d="M1281.2188,2855.0781 L1284.1406,2855.0781 L1285.6094,2860.5156 L1287.0781,2855.0781 L1290.0156,2855.0781 L1290.0156,2867.4688 L1287.9063,2867.4688 L1287.9063,2857.5469 L1286.5938,2862.9688 L1284.6563,2862.9688 L1283.3281,2857.5469 L1283.3281,2867.4688 L1281.2188,2867.4688 L1281.2188,2855.0781 Z "/><text fill="#000000" font-family="sans-serif" font-size="12" font-style="italic" lengthAdjust="spacingAndGlyphs" textLength="60" x="1310.5" y="2858.6387">«module»</text><text fill="#000000" font-family="sans-serif" font-size="12" lengthAdjust="spacingAndGlyphs" textLength="82" x="1299.5" y="2872.6074">pssmdata_py</text><!--MD5=[498b18cc5e36fab516937ddc62e784d1]
link aminoacidlist_py to AminoAcid--><path d="M1823.38,3426.08 C1825.89,3442.1 1829.2,3457.94 1833.5,3473 C1842.11,3503.11 1855.17,3533.72 1869.61,3562.27 " fill="none" id="aminoacidlist_py-&gt;AminoAcid" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1871.94,3566.84,1871.4046,3557.0057,1869.6639,3562.3881,1864.2816,3560.6474,1871.94,3566.84" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="1834.5" y="3469.0669">uses</text><!--MD5=[498b18cc5e36fab516937ddc62e784d1]
link aminoacidlist_py to AminoAcid--><path d="M1873.54,3426.31 C1880.6,3449.8 1887.87,3473.98 1895.02,3497.79 " fill="none" id="aminoacidlist_py-&gt;AminoAcid-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1896.55,3502.86,1897.8165,3493.0929,1895.1237,3498.0677,1890.1489,3495.3749,1896.55,3502.86" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="16" x="1888.5" y="3469.0669">aa</text><!--MD5=[0c3548e8cd040bddec7c0f44a6a7bd81]
link components_py to logging.getLogger--><path d="M4874.76,1124.25 C4863.66,1159.92 4841.75,1210.72 4802.5,1236 C4723.46,1286.9 4470.86,1240.05 4380.5,1266 C4365.02,1270.45 4363.57,1277.32 4348.5,1283 C4294.22,1303.44 4276.64,1295.03 4221.5,1313 C4099.95,1352.61 3962.12,1416.08 3898.36,1446.56 " fill="none" id="components_py-&gt;logging.getLogger" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3893.53,1448.87,3903.3751,1448.5987,3898.0414,1446.7142,3899.9259,1441.3805,3893.53,1448.87" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="4381.5" y="1279.0669">uses</text><!--MD5=[0c44eae2a5a5dab97a97c834d1f9e88d]
link components_py to Graph--><path d="M4881.78,1124.35 C4877.17,1166.82 4864.78,1234.84 4831.5,1283 C4796.27,1333.97 4741.82,1375.68 4692.54,1406.16 " fill="none" id="components_py-&gt;Graph" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4688.09,1408.89,4697.8545,1407.6035,4692.3546,1406.2799,4693.6783,1400.78,4688.09,1408.89" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="37" x="4840.5" y="1279.0669">graph</text><!--MD5=[dcd2c9a08c544af950f4074414ce2d83]
link components_py to np.zeros--><path d="M4903.73,1124.29 C4923.12,1159.47 4956.46,1209.49 5000.5,1236 C5068.86,1277.15 5124.39,1206.45 5177.5,1266 C5237.35,1333.11 5227.03,1989.08 5200.5,2075 C5196.16,2089.06 5142.01,2164.45 5115.69,2200.61 " fill="none" id="components_py-&gt;np.zeros" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="5112.62,2204.82,5121.1506,2199.8976,5115.5626,2200.7776,5114.6826,2195.1896,5112.62,2204.82" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="5221.5" y="1660.0669">uses</text><!--MD5=[78584b4781b6dc1cec9d764c90e659cb]
link conservation_py to Graph--><path d="M5064.49,1117.69 C5043.31,1150.42 5007.47,1200.85 4967.5,1236 C4884.53,1308.98 4774.81,1370.91 4693.22,1411.73 " fill="none" id="conservation_py-&gt;Graph" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4688.38,1414.14,4698.2193,1413.7054,4692.855,1411.9097,4694.6507,1406.5454,4688.38,1414.14" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="37" x="4930.5" y="1279.0669">graph</text><!--MD5=[db29aeee7219d7b990327b45c351d705]
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link contact_py to logging.getLogger--><path d="M4626.38,1100.14 C4510.64,1124.32 4290.47,1178.09 4120.5,1266 C4021.87,1317.01 3922.53,1406.49 3881.77,1445.24 " fill="none" id="contact_py-&gt;logging.getLogger" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3878.01,1448.82,3887.2787,1445.4896,3881.6232,1445.3639,3881.7489,1439.7084,3878.01,1448.82" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="4121.5" y="1279.0669">uses</text><!--MD5=[e022f7c61000af33e016921bd2928494]
link contact_py to UnknownType--><path d="M4626.4,1108.85 C4510.88,1142.71 4288.72,1204.12 4095.5,1236 C4034.33,1246.09 3601.35,1278.75 3539.5,1283 C3476.45,1287.33 3025.61,1280.34 2971.5,1313 C2922.64,1342.49 2897.14,1409.47 2886.94,1443.43 " fill="none" id="contact_py-&gt;UnknownType" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2885.44,1448.59,2891.8,1441.07,2886.84,1443.79,2884.12,1438.83,2885.44,1448.59" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="61" x="3760.5" y="1279.0669">distances</text><!--MD5=[b0fc27137b46a1c09a5dabbde0cfcbca]
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link contact_py to np.logical_and--><path d="M4734.78,1149.77 C4751.05,1179.55 4773.84,1213.22 4802.5,1236 C4833.54,1260.66 4863.66,1233.6 4886.5,1266 C4890.85,1272.18 4887.59,1275.52 4886.5,1283 C4860.9,1457.89 4894.87,1536.46 4772.5,1664 C4744.18,1693.51 4713.71,1664.38 4685.5,1694 C4563.85,1821.71 4624.77,1905.94 4574.5,2075 C4561.23,2119.63 4545.28,2171.85 4536.69,2199.84 " fill="none" id="contact_py-&gt;np.logical_and" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4535.18,2204.78,4541.6483,2197.353,4536.6494,2200.0008,4534.0016,2195.0019,4535.18,2204.78" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="4786.5" y="1660.0669">uses</text><!--MD5=[65d5c2b769fa63f5888e284ff393e03d]
link contact_py to Graph--><path d="M4703.57,1149.68 C4700.88,1189.04 4694.66,1239.88 4680.5,1283 C4677.75,1291.37 4674.61,1299.79 4671.17,1308.17 " fill="none" id="contact_py-&gt;Graph" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4669.23,1312.83,4676.3838,1306.0608,4671.1531,1308.2146,4668.9992,1302.9838,4669.23,1312.83" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="37" x="4685.5" y="1279.0669">graph</text><!--MD5=[ab0f5ce0f55ee20c75e04fcc73fb0328]
link contact_py to np.min--><path d="M4731.95,1149.7 C4747.88,1180.59 4771.2,1215.26 4802.5,1236 C4867.91,1279.35 4925.94,1205.98 4976.5,1266 C5081.24,1390.34 4958.13,1478.19 4873.5,1617 C4857.96,1642.49 4851.76,1649.79 4825.5,1664 C4771.06,1693.46 4734.8,1651.82 4689.5,1694 C4560.24,1814.37 4709.93,1959.27 4576.5,2075 C4399.34,2228.65 4252.4,2026.18 4054.5,2152 C4036.74,2163.29 4024.44,2184.39 4017.24,2200.1 " fill="none" id="contact_py-&gt;np.min" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4015.17,2204.79,4022.4767,2198.186,4017.198,2200.2198,4015.1643,2194.9411,4015.17,2204.79" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="4851.5" y="1660.0669">uses</text><!--MD5=[278d2bf348ab86f62227e6a75b551a14]
link contact_py to np.sum--><path d="M4730.65,1149.66 C4746.4,1181.15 4769.95,1216.36 4802.5,1236 C4868.96,1276.1 5098.02,1208.81 5150.5,1266 C5155.61,1271.57 5151.14,1275.47 5150.5,1283 C5136,1454.17 5211.31,1547.03 5085.5,1664 C5034.65,1711.28 4826.3,1647.76 4774.5,1694 C4645.35,1809.28 4809.87,1946.83 4693.5,2075 C4663.74,2107.78 4624.67,2069.29 4598.5,2105 C4586.94,2120.77 4615.33,2171.88 4632.88,2200.37 " fill="none" id="contact_py-&gt;np.sum" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4635.59,2204.74,4634.2505,2194.9827,4632.9567,2200.4896,4627.4498,2199.1959,4635.59,2204.74" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="5102.5" y="1660.0669">uses</text><!--MD5=[a47f0d898b1252551e750e282d4cfc6b]
link exposure_py to logging.getLogger--><path d="M3764.23,1143.28 C3751.56,1175.7 3730.98,1213.87 3699.5,1236 C3626.21,1287.51 3443.58,1216.41 3503.5,1283 C3545.95,1330.17 3735.39,1276.77 3787.5,1313 C3832.44,1344.24 3851.74,1410.41 3858.89,1443.81 " fill="none" id="exposure_py-&gt;logging.getLogger" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3859.93,1448.88,3862.0227,1439.256,3858.9165,1443.9838,3854.1887,1440.8776,3859.93,1448.88" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="3504.5" y="1279.0669">uses</text><!--MD5=[be88768bf7cb9fe11df0c90c2f931090]
link exposure_py to Graph--><path d="M3819.89,1143.17 C3845.48,1176.64 3882.3,1215.93 3925.5,1236 C4025.45,1282.42 4322.62,1215.37 4420.5,1266 C4441.61,1276.92 4460.89,1292.03 4478.16,1309.07 " fill="none" id="exposure_py-&gt;Graph" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4482.05,1312.97,4478.533,1303.7705,4478.5216,1309.4273,4472.8648,1309.4159,4482.05,1312.97" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="37" x="4444.5" y="1279.0669">graph</text><!--MD5=[f9a5b0f997157b867e8b122e85267b1e]
link exposure_py to PDBParser--><path d="M3765.79,1143.27 C3753.53,1176.56 3732.84,1215.62 3699.5,1236 C3640.33,1272.17 2518.99,1250.01 2451.5,1266 C2434.28,1270.08 2432.71,1278.88 2415.5,1283 C2192.6,1336.4 1612.61,1290.61 1384.5,1313 C1062.17,1344.64 680.65,1422.34 541.09,1452.12 " fill="none" id="exposure_py-&gt;PDBParser" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="535.83,1453.24,545.4667,1455.2731,540.7198,1452.1963,543.7967,1447.4494,535.83,1453.24" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="2452.5" y="1279.0669">uses</text><!--MD5=[2672bff1952dbdb6cb8e772644d2a260]
link exposure_py to HSExposureCA--><path d="M3765.4,1143.25 C3753.03,1176.3 3732.37,1215.14 3699.5,1236 C3602.34,1297.68 3286.43,1216.58 3182.5,1266 C3108.46,1301.21 3069.89,1400.8 3056.29,1443.81 " fill="none" id="exposure_py-&gt;HSExposureCA" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3054.76,1448.76,3061.2485,1441.3506,3056.2424,1443.9848,3053.6083,1438.9787,3054.76,1448.76" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="3183.5" y="1279.0669">uses</text><!--MD5=[ebca87bc8ce34013cb8b2d21d3cce52a]
link exposure_py to np.array--><path d="M3738.41,1143.3 C3711.5,1175.52 3674.12,1213.48 3632.5,1236 C3545.44,1283.11 3473.54,1227.59 3423.5,1313 C3343.87,1448.9 3329.49,1513.05 3374.5,1664 C3436.88,1873.21 3459.58,1957.38 3643.5,2075 C3742.1,2138.06 4064.22,2091.65 4164.5,2152 C4183.16,2163.23 4197.01,2184.34 4205.34,2200.07 " fill="none" id="exposure_py-&gt;np.array" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4207.75,2204.77,4207.1896,2194.9371,4205.4626,2200.3239,4200.0758,2198.5969,4207.75,2204.77" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="3375.5" y="1660.0669">uses</text><!--MD5=[b0bab4873a30a4c8de3c136784c22209]
link _ContactDensity to Polarity--><path d="M5544.2238,1538.4194 C5544.2238,1538.4194 5571.51,1592.17 5585.5,1617 C5654.11,1738.78 5752.5,1743.72 5752.5,1883.5 C5752.5,1883.5 5752.5,1883.5 5752.5,3701 C5752.5,3885.32 2685.02,4006.65 2245.65,4023.09 " fill="none" id="_ContactDensity-Polarity" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2232.56,4023.58,2241.7032,4027.2408,2237.5565,4023.3931,2241.4042,4019.2464,2232.56,4023.58" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2237.5565" x2="2245.55" y1="4023.3931" y2="4023.095"/><polygon fill="#A80036" points="5538.91,1527.66,5537.9804,1534.8109,5544.2238,1538.4194,5545.1533,1531.2684,5538.91,1527.66" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="47" x="5753.5" y="2701.0669">polarity</text><!--MD5=[6b58bf1ef9d97219fd70a4ba5969cd2b]
link irc_py to _ContactDensity--><path d="M5350.97,1121.57 C5397.22,1153.53 5458.56,1204.4 5489.5,1266 C5510.67,1308.14 5514.95,1361.64 5514.33,1402.4 " fill="none" id="irc_py-_ContactDensity" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="5496.5" y="1279.0669">contains</text><polygon fill="#000000" points="5519,1288.1328,5522,1294.1328,5525,1288.1328,5519,1288.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[6b58bf1ef9d97219fd70a4ba5969cd2b]
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link irc_py to pdb2sql.interface--><path d="M5309.89,1136.59 C5321.92,1172.44 5336.94,1221.56 5345.5,1266 C5357.83,1330.02 5361.77,1407.37 5362.98,1443.51 " fill="none" id="irc_py-&gt;pdb2sql.interface" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="5363.15,1448.95,5366.8653,1439.8288,5362.9929,1443.9525,5358.8693,1440.0801,5363.15,1448.95" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="5348.5" y="1279.0669">uses</text><!--MD5=[d38128d41fcdfea2acf744ee905e4949]
link irc_py to Graph--><path d="M5259.54,1136.69 C5237.38,1168.95 5205.29,1209.27 5168.5,1236 C5021.72,1342.63 4818.63,1406.67 4693.34,1438.63 " fill="none" id="irc_py-&gt;Graph" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4688.17,1439.94,4697.8761,1441.6109,4693.0173,1438.7139,4695.9143,1433.8552,4688.17,1439.94" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="37" x="5112.5" y="1279.0669">graph</text><!--MD5=[2573fccf95283f9e0917845efae5537a]
reverse link Exception to DSSPError--><path d="M119.26,1465 C124.29,1465 129.32,1465 134.35,1465 " fill="none" id="Exception&lt;-DSSPError" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="119.22,1472,99.22,1465,119.22,1458,119.22,1472" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[346b1c0eeb68cf97846bcf7788e91631]
reverse link Enum to SecondarySctructure--><path d="M3329.63,2185.95 C3319.06,2160.81 3300.89,2128.8 3273,2113.5 C3206.27,2076.89 606.57,2094 533,2113.5 C487.12,2125.66 440.74,2151.9 405.46,2175.4 " fill="none" id="Enum&lt;-SecondarySctructure" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="3336.27,2183.74,3336.76,2204.92,3323.17,2188.67,3336.27,2183.74" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[be84c25d273e4aa9a5e0d2178dbcc682]
link secondary_structure_py to DSSPError--><path d="M287.49,1143.32 C250.06,1174.93 209.48,1217.45 188.5,1266 C161.22,1329.14 172.9,1414.47 179.32,1448.79 " fill="none" id="secondary_structure_py-DSSPError" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="189.5" y="1279.0669">contains</text><polygon fill="#000000" points="212,1288.1328,215,1294.1328,218,1288.1328,212,1288.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[0f25979e0ceb28fcfe418fe9cec036ca]
link secondary_structure_py to SecondarySctructure--><path d="M353.15,1143 C341.14,1188.74 325.85,1254.38 319.5,1313 C283.78,1642.66 323.7,2043.43 339.03,2175.47 " fill="none" id="secondary_structure_py-SecondarySctructure" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="306.5" y="1660.0669">contains</text><polygon fill="#000000" points="329,1669.1328,332,1675.1328,335,1669.1328,329,1669.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[4c3a258d49f427c146a8fbece2a4d680]
link secondary_structure_py to PDBParser--><path d="M387.52,1143.39 C414.23,1229.88 463,1387.86 480.25,1443.75 " fill="none" id="secondary_structure_py-&gt;PDBParser" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="481.82,1448.83,482.9984,1439.0519,480.3506,1444.0508,475.3517,1441.403,481.82,1448.83" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="429.5" y="1279.0669">uses</text><!--MD5=[380112593b0803a493acbe633b57d090]
link secondary_structure_py to DSSP--><path d="M369.5,1143.39 C369.5,1229.88 369.5,1387.86 369.5,1443.75 " fill="none" id="secondary_structure_py-&gt;DSSP" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="369.5,1448.83,373.5,1439.83,369.5,1443.83,365.5,1439.83,369.5,1448.83" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="370.5" y="1279.0669">uses</text><!--MD5=[6c9df1f84a0173af83fe5d62902dd174]
link secondary_structure_py to Graph--><path d="M460.44,1117.74 C558.83,1151.97 720.92,1204.95 864.5,1236 C1022.21,1270.1 1063.53,1271.78 1224.5,1283 C1313.7,1289.22 4361.98,1276.25 4443.5,1313 C4451.36,1316.54 4458.95,1320.78 4466.27,1325.56 " fill="none" id="secondary_structure_py-&gt;Graph" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4470.78,1328.6,4465.5301,1320.267,4466.6263,1325.8166,4461.0767,1326.9128,4470.78,1328.6" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="37" x="1225.5" y="1279.0669">graph</text><!--MD5=[16b34a702d1b28b095e178d3021dbd46]
link surfacearea_py to Graph--><path d="M6141.23,1130.08 C6110.75,1165.45 6063.36,1212.49 6010.5,1236 C5948.67,1263.49 5774.74,1258.44 5707.5,1266 C5647.4,1272.76 5632.55,1275.87 5572.5,1283 C5453.04,1297.18 5422.29,1294.03 5303.5,1313 C5086.09,1347.72 4835.12,1403.67 4693.08,1436.84 " fill="none" id="surfacearea_py-&gt;Graph" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4688.07,1438.01,4697.7457,1439.8486,4692.9378,1436.868,4695.9185,1432.0601,4688.07,1438.01" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="37" x="5708.5" y="1279.0669">graph</text><!--MD5=[6c603101aac6c92f444b0c4b375835a3]
link surfacearea_py to freesasa.Structure--><path d="M6182.6,1130.34 C6193.71,1212.92 6216.84,1384.78 6224.77,1443.68 " fill="none" id="surfacearea_py-&gt;freesasa.Structure" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="6225.44,1448.7,6228.2226,1439.2524,6224.7829,1443.7434,6220.292,1440.3037,6225.44,1448.7" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="6202.5" y="1279.0669">uses</text><!--MD5=[77ec123b4b5297eefb7c6333873b1a90]
link surfacearea_py to freesasa.calc--><path d="M6201.97,1130.25 C6226.76,1175.52 6264.42,1247.64 6290.5,1313 C6308.67,1358.53 6323.9,1414.15 6331.44,1443.54 " fill="none" id="surfacearea_py-&gt;freesasa.calc" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="6332.75,1448.71,6334.4209,1439.0039,6331.5239,1443.8627,6326.6652,1440.9657,6332.75,1448.71" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="6277.5" y="1279.0669">uses</text><!--MD5=[bd84cecb4e228baa7e3b4a79bf1f0555]
link surfacearea_py to freesasa.selectArea--><path d="M6167.05,1130.34 C6149.84,1212.92 6114.01,1384.78 6101.74,1443.68 " fill="none" id="surfacearea_py-&gt;freesasa.selectArea" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="6100.69,1448.7,6106.4583,1440.7171,6101.7201,1443.8073,6098.6299,1439.069,6100.69,1448.7" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="6137.5" y="1279.0669">uses</text><!--MD5=[d827d82187f8333fce0ed9ba8d03c32a]
reverse link Enum to Polarity--><path d="M3318.07,2253.59 C3309.47,2265.11 3299.61,2278.19 3290.5,2290 C3263.84,2324.58 3250.98,2328.99 3229.5,2367 C3114.27,2570.93 3044.5,2626.26 3044.5,2860.5 C3044.5,2860.5 3044.5,2860.5 3044.5,3701 C3044.5,3877.17 2399.48,3992.17 2232.56,4018.98 " fill="none" id="Enum&lt;-Polarity" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="3312.71,2249.07,3330.27,2237.21,3323.94,2257.43,3312.71,2249.07" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[f049277cc65e53d990a1091937867205]
link AminoAcid to Polarity--><path d="M1982.9326,3908.0412 C1982.9326,3908.0412 1996.84,3933.37 2005.5,3944 C2039.36,3985.58 2098.62,4006.29 2141.57,4016.28 " fill="none" id="AminoAcid-Polarity" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2154.33,4019.05,2146.3821,4013.2335,2149.4436,4017.9904,2144.6867,4021.0518,2154.33,4019.05" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2149.4436" x2="2141.625" y1="4017.9904" y2="4016.29"/><polygon fill="#A80036" points="1977.96,3897.12,1976.8059,3904.2381,1982.9326,3908.0412,1984.0867,3900.9231,1977.96,3897.12" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2006.5" y="3940.0669">_polarity</text><!--MD5=[f049277cc65e53d990a1091937867205]
link AminoAcid to Polarity--><path d="M2045.9051,3843.822 C2045.9051,3843.822 2093.95,3912.94 2118.5,3944 C2126.88,3954.6 2136.32,3965.5 2145.62,3975.73 " fill="none" id="AminoAcid-Polarity-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2154.45,3985.31,2151.2963,3975.9797,2151.0632,3981.6318,2145.4111,3981.3987,2154.45,3985.31" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2151.0632" x2="2145.635" y1="3981.6318" y2="3975.75"/><polygon fill="#A80036" points="2039.2,3833.87,2039.2352,3841.081,2045.9051,3843.822,2045.8699,3836.611,2039.2,3833.87" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="47" x="2119.5" y="3940.0669">polarity</text><!--MD5=[8d2b4e81b684d5cf1d5da3e9089e5181]
link aminoacid_py to Polarity--><path d="M2174.94,3264.6 C2177.3,3361.4 2188.48,3819.35 2192.25,3973.91 " fill="none" id="aminoacid_py-Polarity" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2191.5" y="3704.5669">contains</text><polygon fill="#000000" points="2214,3713.6328,2217,3719.6328,2220,3713.6328,2214,3713.6328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[326b5be82524d6ab31a29292d0348c94]
link aminoacid_py to AminoAcid--><path d="M2165.78,3264.52 C2144.5,3308.49 2088.06,3425.11 2039,3526.47 " fill="none" id="aminoacid_py-AminoAcid" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2073.5" y="3469.0669">contains</text><polygon fill="#000000" points="2096,3478.1328,2099,3484.1328,2102,3478.1328,2096,3478.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[2fb3d4405b6c3b426c6d097890e650b7]
reverse link Enum to AtomicElement--><path d="M3326.27,2255.97 C3313.99,2284.89 3297.36,2327.85 3288.5,2367 C3227.46,2636.62 3218.78,2713.75 3253.5,2988 C3261.95,3054.72 3282.28,3128.92 3298.17,3180.28 " fill="none" id="Enum&lt;-AtomicElement" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="3320.02,2252.8,3334.44,2237.27,3332.85,2258.4,3320.02,2252.8" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[899ef183eeb731d496dc312b3196ae1d]
link Atom to AtomicElement--><path d="M3319.5,2993.53 C3319.5,2993.53 3319.5,3117.75 3319.5,3167.19 " fill="none" id="Atom-AtomicElement" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3319.5,3180.37,3323.5,3171.37,3319.5,3175.37,3315.5,3171.37,3319.5,3180.37" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="3319.5" x2="3319.5" y1="3175.37" y2="3167.37"/><polygon fill="#A80036" points="3319.5,2981.53,3315.5,2987.53,3319.5,2993.53,3323.5,2987.53,3319.5,2981.53" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="53" x="3320.5" y="3031.0669">element</text><!--MD5=[5051ae5408a69a5306829188ee361b21]
link Atom to np.array--><path d="M3376.9285,2811.1308 C3376.9285,2811.1308 3469.95,2716.99 3500.5,2658 C3561.53,2540.15 3469.17,2456.13 3567.5,2367 C3765.71,2187.32 3934.01,2425.83 4164.5,2290 C4180.77,2280.41 4193.34,2263.24 4201.8,2248.55 " fill="none" id="Atom-np.array" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4207.93,2237.02,4200.17,2243.0848,4205.5805,2241.4336,4207.2317,2246.8441,4207.93,2237.02" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="4205.5805" x2="4201.83" y1="2241.4336" y2="2248.49"/><polygon fill="#A80036" points="3368.12,2819.28,3375.2407,2818.1416,3376.9285,2811.1308,3369.8079,2812.2692,3368.12,2819.28" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="50" x="3568.5" y="2517.0669">position</text><!--MD5=[b919a0253a86e19666b261a11c20dca0]
link Atom to Residue--><path d="M3259.5038,2840.0423 C3259.5038,2840.0423 2547.92,2597.5 2364.68,2535.04 " fill="none" id="Atom-Residue" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2352.33,2530.83,2359.5639,2537.5136,2357.064,2532.4391,2362.1385,2529.9392,2352.33,2530.83" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2357.064" x2="2364.635" y1="2532.4391" y2="2535.02"/><polygon fill="#A80036" points="3270.86,2843.92,3266.4745,2838.1957,3259.5038,2840.0423,3263.8893,2845.7665,3270.86,2843.92" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="47" x="2842.5" y="2701.0669">residue</text><!--MD5=[db6201c0b33437533755835ded6e6082]
link Residue to Atom--><path d="M2352.07,2534.55 C2441.24,2571.32 2632.62,2648.71 2797.5,2705 C2966.74,2762.78 3170.8,2820.05 3265.88,2846.03 " fill="none" id="Residue-&gt;Atom" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="3270.88,2847.4,3263.2636,2841.1557,3266.0592,2846.0736,3261.1413,2848.8691,3270.88,2847.4" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="34" x="2798.5" y="2701.0669">atom</text><!--MD5=[4e3b4632fdcb33c37172a4590f86b098]
link Atom to Atom--><path d="M3368.39,2830.87 C3387.29,2829.51 3403,2839.72 3403,2861.5 C3403,2881.24 3390.1,2891.48 3373.61,2892.21 " fill="none" id="Atom-&gt;Atom" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="3368.39,2892.13,3377.3319,2896.2582,3373.3895,2892.2014,3377.4462,2888.259,3368.39,2892.13" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="109" x="3409" y="2866.0669">alternative_atom</text><!--MD5=[c9cd59dc8c878a7cbbd821e72ac1c237]
link atom_py to AtomicElement--><path d="M3679.86,2531.52 C3676.43,2565.86 3667.18,2642.8 3648.5,2705 C3608.99,2836.52 3595.53,2870.47 3524.5,2988 C3482.11,3058.13 3422.69,3130.38 3378.73,3180.25 " fill="none" id="atom_py-AtomicElement" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="3640.5" y="2866.0669">contains</text><polygon fill="#000000" points="3663,2875.1328,3666,2881.1328,3669,2875.1328,3663,2875.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[f0b9170760f0218608c08a43be0c935b]
link atom_py to Atom--><path d="M3672.9,2531.56 C3659.19,2559.63 3630.83,2614.99 3600.5,2658 C3539.95,2743.88 3431.13,2806.87 3368.15,2838.21 " fill="none" id="atom_py-Atom" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="3572.5" y="2701.0669">contains</text><polygon fill="#000000" points="3595,2710.1328,3598,2716.1328,3601,2710.1328,3595,2710.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[c631694f7c845af50bcb90fdc2ce6d1d]
reverse link Pair to Contact--><path d="M2532.48,2178.07 C2565.16,2153.94 2609.45,2126.18 2654,2113.5 C2761.29,2082.95 3056.85,2062.37 3156,2113.5 C3193.46,2132.82 3216.59,2179.9 3226.64,2204.86 " fill="none" id="Pair&lt;-Contact" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="2536.66,2183.69,2516.51,2190.26,2528.16,2172.56,2536.66,2183.69" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[f215e10bb8077ad40a1a2f4ef0c90916]
reverse link ABC to Contact--><path d="M3176.67,2221 C3181.73,2221 3186.79,2221 3191.84,2221 " fill="none" id="ABC&lt;-Contact" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="3176.53,2228,3156.53,2221,3176.53,2214,3176.53,2228" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[c3027bab14ac6dac92e9de11df1b1769]
reverse link Contact to ResidueContact--><path d="M3218.34,2186.2 C3205.99,2160.95 3185.41,2128.67 3156,2113.5 C3095.96,2082.53 3070.46,2101.36 3004,2113.5 C2925.96,2127.75 2841.52,2162.31 2785.08,2188.42 " fill="none" id="Contact&lt;-ResidueContact" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="3224.9,2183.74,3226.64,2204.86,3212.11,2189.43,3224.9,2183.74" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[43ce1f97d1965a0ea71776ed2414174e]
link ResidueContact to Residue--><path d="M2722.7495,2289.1313 C2722.7495,2289.1313 2715.48,2323.66 2705.5,2337 C2623.08,2447.22 2456.61,2488.73 2365.19,2503.65 " fill="none" id="ResidueContact-Residue" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2352.26,2505.66,2361.7679,2508.2291,2357.2006,2504.8915,2360.5382,2500.3242,2352.26,2505.66" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2357.2006" x2="2365.11" y1="2504.8915" y2="2503.66"/><polygon fill="#A80036" points="2723.83,2277.18,2719.306,2282.7955,2722.7495,2289.1313,2727.2735,2283.5158,2723.83,2277.18" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="55" x="2716.5" y="2333.0669">residue1</text><!--MD5=[43ce1f97d1965a0ea71776ed2414174e]
link ResidueContact to Residue--><path d="M2664.1655,2285.7794 C2664.1655,2285.7794 2627.64,2322.14 2608.5,2337 C2530.24,2397.74 2428.46,2451.32 2364.04,2482.59 " fill="none" id="ResidueContact-Residue-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2352.06,2488.35,2361.9042,2488.0479,2356.5646,2486.1801,2358.4324,2480.8405,2352.06,2488.35" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2356.5646" x2="2363.775" y1="2486.1801" y2="2482.71"/><polygon fill="#A80036" points="2672.41,2277.06,2665.3813,2278.6715,2664.1655,2285.7794,2671.1942,2284.1679,2672.41,2277.06" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="55" x="2630.5" y="2333.0669">residue2</text><!--MD5=[56d1b538687c4d07fcc9ff75735195f5]
reverse link Contact to AtomicContact--><path d="M3246.36,2186.22 C3258.48,2160.97 3278.76,2128.69 3308,2113.5 C3334.42,2099.77 3347.81,2101.37 3375,2113.5 C3399.39,2124.38 3420.19,2144.82 3436.16,2164.97 " fill="none" id="Contact&lt;-AtomicContact" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="3252.64,2189.33,3238.22,2204.86,3239.8,2183.73,3252.64,2189.33" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[6328d7101dfdeb5d6ab7b7785aa55ef0]
link AtomicContact to Atom--><path d="M3405.4543,2285.7444 C3405.4543,2285.7444 3347.14,2348.39 3339.5,2367 C3292.2,2482.23 3292.14,2625.58 3300.94,2728.04 " fill="none" id="AtomicContact-Atom" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3302.14,2741.27,3305.3023,2731.9426,3301.6839,2736.2909,3297.3356,2732.6724,3302.14,2741.27" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="3301.6839" x2="3300.96" y1="2736.2909" y2="2728.325"/><polygon fill="#A80036" points="3413.88,2277.2,3406.819,2278.6636,3405.4543,2285.7444,3412.5153,2284.2808,3413.88,2277.2" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="42" x="3340.5" y="2517.0669">atom1</text><!--MD5=[6328d7101dfdeb5d6ab7b7785aa55ef0]
link AtomicContact to Atom--><path d="M3461.4306,2289.1051 C3461.4306,2289.1051 3421.26,2529.6 3387.5,2658 C3381.42,2681.11 3374.1,2705.41 3366.54,2728.84 " fill="none" id="AtomicContact-Atom-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3362.45,2741.37,3369.0502,2734.06,3364.0047,2736.6179,3361.4468,2731.5724,3362.45,2741.37" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="3364.0047" x2="3366.485" y1="2736.6179" y2="2729.015"/><polygon fill="#A80036" points="3463.29,2277.25,3458.4086,2282.5577,3461.4306,2289.1051,3466.312,2283.7973,3463.29,2277.25" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="42" x="3449.5" y="2517.0669">atom2</text><!--MD5=[ca6e46d0295d041286d31abe59428543]
link pair_py to Pair--><path d="M2728.41,1902.79 C2659.91,1932.38 2530.3,1999.9 2477.5,2105 C2470.33,2119.28 2467.93,2135.86 2468.03,2151.92 " fill="none" id="pair_py-Pair" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#000000" points="2485.5,2112.0664,2479.5,2115.0664,2485.5,2118.0664,2485.5,2112.0664" style="stroke: #000000; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2491.5" y="2118.0669">contains</text><!--MD5=[e6fa30003aaed2c570f3fabb20d8d491]
link pair_py to Contact--><path d="M2770.17,1903.82 C2765.59,1948.87 2760.86,2065.52 2825.5,2122 C2883.95,2173.07 3104.33,2116.77 3173.5,2152 C3196.48,2163.7 3214.35,2188.57 3224.15,2204.77 " fill="none" id="pair_py-Contact" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2826.5" y="2118.0669">contains</text><polygon fill="#000000" points="2883.5,2112.0664,2889.5,2115.0664,2883.5,2118.0664,2883.5,2112.0664" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[a1b5bf4953c1289067beaadd0cd4e0ed]
link pair_py to ResidueContact--><path d="M2766.2,1903.7 C2753.69,1940.93 2726.08,2028.71 2716.5,2105 C2715.56,2112.5 2716.38,2114.45 2716.5,2122 C2716.71,2135.87 2717.09,2150.84 2717.51,2164.81 " fill="none" id="pair_py-ResidueContact" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2717.5" y="2118.0669">contains</text><polygon fill="#000000" points="2740,2127.1328,2743,2133.1328,2746,2127.1328,2740,2127.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[f20b4b451a5a496d29ab9fd3c6c37e1e]
link pair_py to AtomicContact--><path d="M2776.63,1903.55 C2786.28,1941.45 2813.97,2029.57 2871.5,2075 C2938.42,2127.84 2973.44,2107.71 3057.5,2122 C3204.87,2147.06 3254.82,2093.79 3392.5,2152 C3400.5,2155.38 3408.28,2159.89 3415.64,2164.97 " fill="none" id="pair_py-AtomicContact" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="3058.5" y="2118.0669">contains</text><polygon fill="#000000" points="3115.5,2112.0664,3121.5,2115.0664,3115.5,2118.0664,3115.5,2112.0664" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[7d44a207d8ac5a4123b2317322cbb0e6]
link Residue to Chain--><path d="M2238.8838,2521.789 C2238.8838,2521.789 1615.68,2615.13 1252.5,2735 C1174.9,2760.61 1090,2801.69 1035.59,2829.82 " fill="none" id="Residue-Chain" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1023.78,2835.97,1033.6101,2835.3632,1028.2153,2833.6617,1029.9168,2828.2668,1023.78,2835.97" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="1028.2153" x2="1035.31" y1="2833.6617" y2="2829.965"/><polygon fill="#A80036" points="2250.77,2520.14,2244.2772,2517.0025,2238.8838,2521.789,2245.3766,2524.9266,2250.77,2520.14" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="34" x="1393.5" y="2701.0669">chain</text><!--MD5=[8fa38440c2a815834c6fa8477377ef75]
link Chain to Residue--><path d="M1023.7,2830.88 C1085.14,2792.01 1199.64,2724.47 1306.5,2688 C1651.38,2570.3 2091.91,2528.7 2245.61,2517.21 " fill="none" id="Chain-&gt;Residue" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="2250.96,2516.82,2241.6877,2513.4997,2245.9738,2517.1915,2242.282,2521.4776,2250.96,2516.82" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="47" x="1307.5" y="2701.0669">residue</text><!--MD5=[e78d46e516037e53bb56585b5ef59517]
link SingleResidueVariant to Residue--><path d="M2159.9636,2295.79 C2159.9636,2295.79 2162.21,2324.46 2166.5,2337 C2181.59,2381.15 2212.88,2422.8 2241.55,2454.32 " fill="none" id="SingleResidueVariant-Residue" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2250.74,2464.19,2247.5353,2454.8771,2247.3331,2460.5303,2241.6799,2460.3281,2250.74,2464.19" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2247.3331" x2="2241.88" y1="2460.5303" y2="2454.68"/><polygon fill="#A80036" points="2159.99,2283.79,2155.9768,2289.7812,2159.9636,2295.79,2163.9768,2289.7988,2159.99,2283.79" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2167.5" y="2333.0669">_residue</text><!--MD5=[e78d46e516037e53bb56585b5ef59517]
link SingleResidueVariant to Residue--><path d="M2213.1311,2294.188 C2213.1311,2294.188 2222.57,2311.87 2226.5,2320 C2233.11,2333.69 2239.6,2348.12 2245.82,2362.67 " fill="none" id="SingleResidueVariant-Residue-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2250.98,2374.91,2251.1625,2365.0628,2249.0343,2370.3041,2243.793,2368.1759,2250.98,2374.91" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2249.0343" x2="2245.93" y1="2370.3041" y2="2362.93"/><polygon fill="#A80036" points="2207.3,2283.7,2206.7195,2290.8877,2213.1311,2294.188,2213.7115,2287.0003,2207.3,2283.7" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="47" x="2235.5" y="2333.0669">residue</text><!--MD5=[6596b8eb4adb1465dfe15854f77b7e82]
link SingleResidueVariant to AminoAcid--><path d="M2158.8663,2295.457 C2158.8663,2295.457 2034.34,3154.89 1985.82,3489.72 " fill="none" id="SingleResidueVariant-AminoAcid" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1983.9,3502.98,1989.1443,3494.6435,1984.614,3498.0312,1981.2262,3493.501,1983.9,3502.98" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="1984.614" x2="1985.765" y1="3498.0312" y2="3490.11"/><polygon fill="#A80036" points="2160.58,2283.58,2155.7642,2288.9473,2158.8663,2295.457,2163.6822,2290.0897,2160.58,2283.58" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="124" x="2095.5" y="2866.0669">variant_amino_acid</text><!--MD5=[140757c78c6ac7b14eb88f525e3038dd]
link residue_py to Residue--><path d="M1821.92,1903.68 C1828.27,1980.06 1856.48,2273.9 1919.5,2337 C1963.24,2380.8 1997.88,2344.38 2055.5,2367 C2127.19,2395.15 2202.56,2442.41 2250.68,2475.19 " fill="none" id="residue_py-Residue" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="1892.5" y="2225.5669">contains</text><polygon fill="#000000" points="1915,2234.6328,1918,2240.6328,1921,2234.6328,1915,2234.6328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[5444b6583400e0422e19e4ac783e80ff]
link residue_py to SingleResidueVariant--><path d="M1839.51,1903.72 C1889.08,1951.23 2024.06,2080.6 2105.2,2158.38 " fill="none" id="residue_py-SingleResidueVariant" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2067.5" y="2118.0669">contains</text><polygon fill="#000000" points="2124.5,2112.0664,2130.5,2115.0664,2124.5,2118.0664,2124.5,2112.0664" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[0b7ed7146767844d829c8c1f462b6ab6]
link PDBStructure to Chain--><path d="M792.8119,3132.5053 C792.8119,3132.5053 794.16,3052.95 809.5,3018 C832.42,2965.77 882.49,2923.36 922.22,2896.1 " fill="none" id="PDBStructure-Chain" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="933.12,2888.82,923.4158,2890.5019,928.9648,2891.6011,927.8656,2897.1501,933.12,2888.82" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="928.9648" x2="922.31" y1="2891.6011" y2="2896.04"/><polygon fill="#A80036" points="793.59,3144.48,797.1925,3138.2333,792.8119,3132.5053,789.2094,3138.752,793.59,3144.48" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="48" x="810.5" y="3031.0669">_chains</text><!--MD5=[0b7ed7146767844d829c8c1f462b6ab6]
link PDBStructure to Chain--><path d="M848.42,3144.36 C863.32,3104.65 881.36,3058.8 899.5,3018 C909.15,2996.3 920.3,2973.3 931.13,2951.84 " fill="none" id="PDBStructure-&gt;Chain" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="933.43,2947.29,925.7954,2953.512,931.1711,2951.7506,932.9325,2957.1263,933.43,2947.29" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="34" x="900.5" y="3031.0669">chain</text><!--MD5=[d2687023b054e4af44d5cdd0b6cbdfcf]
link Chain to PDBStructure--><path d="M951.7111,2999.8632 C951.7111,2999.8632 943.89,3024.13 939.5,3035 C923.34,3075.04 900.02,3116.26 877.77,3151.44 " fill="none" id="Chain-PDBStructure" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="870.59,3162.64,878.8144,3157.2216,873.2882,3158.4305,872.0792,3152.9044,870.59,3162.64" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="873.2882" x2="877.61" y1="3158.4305" y2="3151.695"/><polygon fill="#A80036" points="955.06,2988.34,949.5445,2992.9853,951.7111,2999.8632,957.2267,2995.2179,955.06,2988.34" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="40" x="946.5" y="3031.0669">model</text><!--MD5=[4c1a1cb66f342ac6017e867e6f6b1a68]
link Chain to PssmRow--><path d="M1029.6715,2950.1682 C1029.6715,2950.1682 1122.23,3108.7 1158.81,3171.37 " fill="none" id="Chain-PssmRow" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1165.44,3182.74,1164.3649,3172.95,1162.9227,3178.4199,1157.4528,3176.9777,1165.44,3182.74" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="1162.9227" x2="1158.89" y1="3178.4199" y2="3171.51"/><polygon fill="#A80036" points="1023.63,2939.8,1023.1947,2946.998,1029.6715,2950.1682,1030.1068,2942.9703,1023.63,2939.8" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="35" x="1078.5" y="3031.0669">pssm</text><!--MD5=[2a79505f5b8b0d1026a113d240800e67]
link structure_py to PDBStructure--><path d="M739.35,2531.57 C747.94,2615.28 784.21,2968.75 802.24,3144.47 " fill="none" id="structure_py-PDBStructure" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="787.5" y="2866.0669">contains</text><polygon fill="#000000" points="810,2875.1328,813,2881.1328,816,2875.1328,810,2875.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[44bdbbfaaaa7deb703163944a67bf258]
link structure_py to Chain--><path d="M736.62,2531.66 C735.72,2567.57 738,2649.04 772.5,2705 C811.18,2767.74 885.21,2814.06 933.19,2839.15 " fill="none" id="structure_py-Chain" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="773.5" y="2701.0669">contains</text><polygon fill="#000000" points="796,2710.1328,799,2716.1328,802,2710.1328,796,2710.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[05b65c4c604df55adec3e867cd3aa277]
link Query to UnknownType--><path d="M1852.4096,1225.4665 C1852.4096,1225.4665 1859.37,1232.96 1862.5,1236 C1870.09,1243.39 1935.31,1280.07 1945.5,1283 C2230.68,1365.03 2327.17,1231.5 2612.5,1313 C2707.13,1340.03 2804.52,1406.06 2851.94,1441.18 " fill="none" id="Query-UnknownType" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2862.35,1448.99,2857.5576,1440.3858,2858.3526,1445.9865,2852.7519,1446.7816,2862.35,1448.99" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2858.3526" x2="2851.955" y1="1445.9865" y2="1441.19"/><polygon fill="#A80036" points="1844.56,1216.39,1845.4593,1223.5448,1852.4096,1225.4665,1851.5103,1218.3117,1844.56,1216.39" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="63" x="1946.5" y="1279.0669">resolution</text><!--MD5=[05b65c4c604df55adec3e867cd3aa277]
link Query to UnknownType--><path d="M1853.9391,1229.7749 C1853.9391,1229.7749 1859.86,1234.26 1862.5,1236 C1894.92,1257.32 2169.91,1278.95 2208.5,1283 C2387.57,1301.79 2440.11,1261.03 2612.5,1313 C2706.49,1341.34 2803.8,1406.51 2851.48,1441.24 " fill="none" id="Query-UnknownType-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2861.97,1448.97,2857.1021,1440.4083,2857.9464,1446.0018,2852.3529,1446.8461,2861.97,1448.97" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2857.9464" x2="2851.5" y1="1446.0018" y2="1441.26"/><polygon fill="#A80036" points="1844.79,1222.01,1846.7763,1228.9422,1853.9391,1229.7749,1851.9529,1222.8427,1844.79,1222.01" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="59" x="2209.5" y="1279.0669">chain_ids</text><!--MD5=[05b65c4c604df55adec3e867cd3aa277]
link Query to UnknownType--><path d="M1719.0464,1248.3078 C1719.0464,1248.3078 1728.06,1273.23 1737.5,1283 C1771.3,1317.98 2565.66,1299.89 2612.5,1313 C2707.28,1339.53 2804.6,1405.78 2851.97,1441.05 " fill="none" id="Query-UnknownType-2" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2862.38,1448.9,2857.6008,1440.2884,2858.3873,1445.8903,2852.7853,1446.6768,2862.38,1448.9" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2858.3873" x2="2852" y1="1445.8903" y2="1441.075"/><polygon fill="#A80036" points="1717.08,1236.47,1714.1173,1243.0444,1719.0464,1248.3078,1722.0091,1241.7334,1717.08,1236.47" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="78" x="1738.5" y="1279.0669">pssm_paths</text><!--MD5=[05b65c4c604df55adec3e867cd3aa277]
link Query to UnknownType--><path d="M1820.4303,1246.081 C1820.4303,1246.081 1842.5,1273.37 1856.5,1283 C1925.76,1330.64 2531.61,1290.12 2612.5,1313 C2707.21,1339.78 2804.56,1405.92 2851.96,1441.12 " fill="none" id="Query-UnknownType-3" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2862.37,1448.95,2857.5832,1440.3426,2858.3746,1445.9438,2852.7734,1446.7352,2862.37,1448.95" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2858.3746" x2="2851.975" y1="1445.9438" y2="1441.135"/><polygon fill="#A80036" points="1813.89,1236.02,1813.8065,1243.2306,1820.4303,1246.081,1820.5138,1238.8704,1813.89,1236.02" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="46" x="1857.5" y="1279.0669">targets</text><!--MD5=[466b916033d00d924387435d2f58e2f6]
link Query to Graph--><path d="M1844.65,1223.1 C1850.22,1227.93 1856.17,1232.28 1862.5,1236 C1904.53,1260.7 2690.79,1264.05 2739.5,1266 C2903.99,1272.59 2944.98,1277.37 3109.5,1283 C3183.59,1285.53 4376.12,1282.09 4443.5,1313 C4451.33,1316.59 4458.91,1320.88 4466.21,1325.68 " fill="none" id="Query-&gt;Graph" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="4470.72,1328.74,4465.5166,1320.3779,4466.5819,1325.9335,4461.0263,1326.9989,4470.72,1328.74" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="37" x="3110.5" y="1279.0669">graph</text><!--MD5=[acd4436c7a7c8913ce40d51dc3ebfbab]
link Query to PDBStructure--><path d="M1698.31,1089.9 C1587.59,1101.34 1378.3,1139.45 1263.5,1266 C1131.76,1411.23 1191.62,1501.09 1156.5,1694 C1119.8,1895.6 1122.98,1948.01 1103.5,2152 C1068.08,2522.92 1185.92,2644.94 1040.5,2988 C1004.56,3072.77 928.93,3148.67 874.62,3195.52 " fill="none" id="Query-&gt;PDBStructure" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="870.75,3198.84,880.1865,3196.0199,874.5463,3195.586,874.9801,3189.9459,870.75,3198.84" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="58" x="1104.5" y="2225.5669">structure</text><!--MD5=[c194bcfb33399c3d39c955d37867cdeb]
link Query to Literal--><path d="M1698.21,1087.08 C1585.18,1094.73 1371.27,1127.77 1274.5,1266 C1270.17,1272.19 1269.98,1276.94 1274.5,1283 C1302.5,1320.53 1340.76,1281.6 1375.5,1313 C1414.25,1348.03 1429.34,1410.9 1434.76,1443.36 " fill="none" id="Query-&gt;Literal" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="1435.6,1448.68,1438.1332,1439.1625,1434.8128,1443.7424,1430.233,1440.422,1435.6,1448.68" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="58" x="1275.5" y="1279.0669">verbosity</text><!--MD5=[95ac14fac8775709e3ab51439efc7383]
link Query to list--><path d="M1698.49,1106.38 C1626.98,1131.65 1522.03,1181.37 1474.5,1266 C1463.76,1285.12 1481.56,1292.56 1489.5,1313 C1507.15,1358.45 1521.13,1414.1 1527.95,1443.51 " fill="none" id="Query-&gt;list" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="1529.14,1448.69,1531.0386,1439.0259,1528.0282,1443.8152,1523.2389,1440.8048,1529.14,1448.69" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="108" x="1475.5" y="1279.0669">feature_modules</text><!--MD5=[f482ec5320bdeba1c8a2ba94c3c54631]
reverse link Query to SingleResidueVariantQuery--><path d="M1864.71,1084 C1869.76,1084 1874.82,1084 1879.88,1084 " fill="none" id="Query&lt;-SingleResidueVariantQuery" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="1864.57,1091,1844.57,1084,1864.57,1077,1864.57,1091" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[802c4afc203539f62d4cc7048137833d]
link SingleResidueVariantQuery to UnknownType--><path d="M2042.0245,1188.1392 C2042.0245,1188.1392 2077.25,1224.61 2098.5,1236 C2175.71,1277.36 2406.83,1243.59 2491.5,1266 C2508.61,1270.53 2511.14,1276.27 2527.5,1283 C2564.55,1298.24 2576.01,1296.47 2612.5,1313 C2699.66,1352.49 2796.19,1410.41 2846.56,1441.8 " fill="none" id="SingleResidueVariantQuery-UnknownType" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2857.75,1448.82,2852.2466,1440.6522,2853.5128,1446.1656,2847.9995,1447.4318,2857.75,1448.82" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2853.5128" x2="2846.735" y1="1446.1656" y2="1441.915"/><polygon fill="#A80036" points="2034.44,1178.84,2035.1325,1186.0178,2042.0245,1188.1392,2041.332,1180.9615,2034.44,1178.84" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="93" x="2528.5" y="1279.0669">insertion_code</text><!--MD5=[34c0bbe16dd61fd92fc3eba923fedd14]
link SingleResidueVariantQuery to AminoAcid--><path d="M2061.5404,1188.0415 C2061.5404,1188.0415 2112.24,1256.18 2115.5,1266 C2117.88,1273.17 2118.39,1276.02 2115.5,1283 C2108.28,1300.42 2093.65,1295.99 2085.5,1313 C2056.57,1373.4 1955.5,2444.53 1955.5,2511.5 C1955.5,2511.5 1955.5,2511.5 1955.5,3246.5 C1955.5,3325.96 1955.5,3413.27 1955.5,3489.82 " fill="none" id="SingleResidueVariantQuery-AminoAcid" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1955.5,3503,1959.5,3494,1955.5,3498,1951.5,3494,1955.5,3503" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="1955.5" x2="1955.5" y1="3498" y2="3490"/><polygon fill="#A80036" points="2054.25,1178.51,2054.718,1185.7059,2061.5404,1188.0415,2061.0724,1180.8456,2054.25,1178.51" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="131" x="1971.5" y="2333.0669">wildtype_amino_acid</text><!--MD5=[34c0bbe16dd61fd92fc3eba923fedd14]
link SingleResidueVariantQuery to AminoAcid--><path d="M1917.2146,1187.9975 C1917.2146,1187.9975 1882.19,1224.24 1861.5,1236 C1772.26,1286.72 1706.29,1194.64 1632.5,1266 C1518.84,1375.92 1677.88,1497.37 1574.5,1617 C1500.98,1702.08 1399.82,1603.19 1333.5,1694 C1283.57,1762.37 1329,1990.45 1333.5,2075 C1339.73,2191.94 1336.9,2222.51 1361.5,2337 C1468.49,2834.98 1467.25,2982.94 1718.5,3426 C1757.04,3493.96 1814.13,3560.38 1862.63,3610.68 " fill="none" id="SingleResidueVariantQuery-AminoAcid-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1871.89,3620.2,1868.4833,3610.9591,1868.4042,3616.6154,1862.7479,3616.5364,1871.89,3620.2" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="1868.4042" x2="1862.825" y1="3616.6154" y2="3610.885"/><polygon fill="#A80036" points="1924.85,1178.74,1917.9465,1180.8236,1917.2146,1187.9975,1924.1181,1185.9139,1924.85,1178.74" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="124" x="1362.5" y="2333.0669">variant_amino_acid</text><!--MD5=[05fdada912bff2bc39a35cd21d46e4dd]
link SingleResidueVariantQuery to SingleResidueVariant--><path d="M2051.2889,1188.1128 C2051.2889,1188.1128 2082.06,1222.37 2098.5,1236 C2120.84,1254.53 2141.41,1241.21 2156.5,1266 C2245.93,1412.94 2104.36,1475.72 2088.5,1647 C2079.68,1742.27 2128.82,2012.94 2154.56,2145.29 " fill="none" id="SingleResidueVariantQuery-SingleResidueVariant" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2157.12,2158.42,2159.3145,2148.8188,2156.1584,2153.5133,2151.4639,2150.3572,2157.12,2158.42" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2156.1584" x2="2154.625" y1="2153.5133" y2="2145.665"/><polygon fill="#A80036" points="2043.66,1178.85,2044.3869,1186.0244,2051.2889,1188.1128,2050.5621,1180.9384,2043.66,1178.85" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="44" x="2089.5" y="1660.0669">variant</text><!--MD5=[983239fcf9eddc27c96c9f7ba04422ff]
link SingleResidueVariantQuery to Residue--><path d="M2040.02,1178.77 C2056.87,1199.84 2076.64,1220.52 2098.5,1236 C2132.56,1260.13 2159.2,1235.32 2187.5,1266 C2465.62,1567.54 2395.34,2102.31 2339.41,2361.87 " fill="none" id="SingleResidueVariantQuery-&gt;Residue" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="2338.34,2366.81,2344.1529,2358.8595,2339.3974,2361.9231,2336.3338,2357.1676,2338.34,2366.81" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="98" x="2392.5" y="1889.0669">variant_residue</text><!--MD5=[c234c42551c30bdd53ddb1b783a236fd]
reverse link Query to ProteinProteinInterfaceQuery--><path d="M1849.96,916.93 C1859,907.89 1868.99,899.9 1880,893.5 C1972.8,839.56 5648.11,845.28 5744,893.5 C5806.57,924.97 5848.44,998.65 5869.51,1044.6 " fill="none" id="Query&lt;-ProteinProteinInterfaceQuery" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="1855.07,921.71,1836.51,931.94,1844.64,912.37,1855.07,921.71" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[292d5c16b2240a37bda1ba460e7a9edf]
link QueryCollection to Query--><path d="M2695.9747,596.7808 C2695.9747,596.7808 2323.89,774.38 2110.5,855 C2002.54,895.79 1953.34,860.81 1862.5,932 C1859.66,934.22 1856.89,936.56 1854.19,939 " fill="none" id="QueryCollection-Query" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1844.71,948.24,1853.9483,944.8262,1848.2919,944.7515,1848.3666,939.0951,1844.71,948.24" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="1848.2919" x2="1854.015" y1="944.7515" y2="939.17"/><polygon fill="#A80036" points="2706.76,591.52,2699.6137,590.5553,2695.9747,596.7808,2703.1209,597.7455,2706.76,591.52" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="1963.5" y="898.0669">_queries</text><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="7" x="1852.6207" y="930.5352">*</text><!--MD5=[292d5c16b2240a37bda1ba460e7a9edf]
link QueryCollection to Query--><path d="M2706.88,596.89 C2570.83,671.57 2285.15,820.21 2026.5,902 C1955.85,924.34 1923.46,889.88 1862.5,932 C1857.58,935.4 1852.88,939.16 1848.4,943.2 " fill="none" id="QueryCollection-&gt;Query" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="1844.69,946.66,1853.992,943.4239,1848.3381,943.2408,1848.5213,937.5869,1844.69,946.66" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="36" x="2070.5" y="898.0669">query</text><!--MD5=[02a9b7a7fafe4c49d7bfcae0198ef8bc]
link QueryCollection to UnknownType--><path d="M2699.3956,652.594 C2699.3956,652.594 2411.09,1068.21 2560.5,1236 C2598.88,1279.11 2773.96,1229.29 2818.5,1266 C2869.65,1308.15 2879.83,1391.79 2881.5,1435.65 " fill="none" id="QueryCollection-UnknownType" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2881.79,1448.88,2885.5913,1439.7943,2881.6801,1443.8812,2877.5932,1439.9701,2881.79,1448.88" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2881.6801" x2="2881.51" y1="1443.8812" y2="1435.88"/><polygon fill="#A80036" points="2706.9,643.23,2700.0265,645.4105,2699.3956,652.594,2706.2691,650.4135,2706.9,643.23" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="68" x="2561.5" y="1088.5669">_ids_count</text><!--MD5=[02a9b7a7fafe4c49d7bfcae0198ef8bc]
link QueryCollection to UnknownType--><path d="M2743.6538,701.3529 C2743.6538,701.3529 2635.58,1157.02 2700.5,1236 C2744.22,1289.2 2805.03,1216.12 2852.5,1266 C2896.29,1312.01 2892.32,1393.29 2886.48,1436 " fill="none" id="QueryCollection-UnknownType-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2884.49,1448.9,2889.8168,1440.616,2885.2532,1443.9586,2881.9106,1439.3949,2884.49,1448.9" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="2885.2532" x2="2886.47" y1="1443.9586" y2="1436.045"/><polygon fill="#A80036" points="2746.79,689.77,2741.3609,694.5161,2743.6538,701.3529,2749.0829,696.6069,2746.79,689.77" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="42" x="2701.5" y="1088.5669">_prefix</text><!--MD5=[02a9b7a7fafe4c49d7bfcae0198ef8bc]
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link query_py to Query--><path d="M2722.76,93.87 C2554.54,106.51 2109.4,148.62 2004.5,246 C1813.4,423.42 1774.14,742.91 1768.8,931.68 " fill="none" id="query_py-Query" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#000000" points="2012.5,549.0664,2006.5,552.0664,2012.5,555.0664,2012.5,549.0664" style="stroke: #000000; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2018.5" y="555.0669">contains</text><!--MD5=[45e72bb19b47263d3b8a27cc6b2d3c05]
link query_py to SingleResidueVariantQuery--><path d="M2744.82,124.64 C2621.26,228.43 2259.17,547.57 2055.5,885 C2036.13,917.1 2020.28,955.05 2008.23,989.1 " fill="none" id="query_py-SingleResidueVariantQuery" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2602.5" y="555.0669">contains</text><polygon fill="#000000" points="2625,564.1328,2628,570.1328,2631,564.1328,2625,564.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[35f4728d79d89628ab6da5705cdc8827]
link query_py to ProteinProteinInterfaceQuery--><path d="M2852.16,91.88 C3061.1,100.19 3716.08,131.13 3915.5,199 C4435.7,376.04 4443.25,678.11 4963.5,855 C5300.85,969.7 5447.07,764.39 5761.5,932 C5808.95,957.29 5845.17,1009.15 5865.89,1044.98 " fill="none" id="query_py-ProteinProteinInterfaceQuery" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="4964.5" y="555.0669">contains</text><polygon fill="#000000" points="5021.5,549.0664,5027.5,552.0664,5021.5,555.0664,5021.5,549.0664" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[04525a0b8ea388bd9e144b8e569743e4]
link query_py to QueryCollection--><path d="M2787.5,124.83 C2787.5,185.37 2787.5,312 2787.5,411.3 " fill="none" id="query_py-QueryCollection" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2788.5" y="212.0669">contains</text><polygon fill="#000000" points="2811,221.1328,2814,227.1328,2817,221.1328,2811,221.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[76d89d74194c0ea65b55c79561abecb2]
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link target_py to StructureSimilarity--><path d="M6104.87,1924.53 C6076.24,1995.98 6016.35,2145.48 5994.61,2199.76 " fill="none" id="target_py-&gt;StructureSimilarity" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="5992.63,2204.71,5999.7046,2197.858,5994.4992,2200.0726,5992.2847,2194.8672,5992.63,2204.71" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="6030.5" y="2118.0669">uses</text><!--MD5=[0710f4b63cf1011627d959c535f8c204]
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link graph_py to Node--><path d="M4031.96,1130 C4056.29,1175.94 4100.4,1245.66 4159.5,1283 C4215.87,1318.62 4264.33,1261.35 4306.5,1313 C4366.04,1385.92 4331.66,1665.01 4310,1803.95 " fill="none" id="graph_py-&gt;Node" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4309.17,1809.24,4314.5136,1800.9668,4309.9432,1804.3001,4306.6099,1799.7297,4309.17,1809.24" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="4340.5" y="1469.5669">uses</text><!--MD5=[48e76a215255921e705e1124690f9862]
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link graph_py to Graph--><path d="M4078.12,1092.61 C4181.84,1107.69 4380.65,1150.6 4499.5,1266 C4512.14,1278.28 4522.85,1292.82 4531.9,1308.36 " fill="none" id="graph_py-&gt;Graph" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4534.41,1312.77,4533.4351,1302.9695,4531.937,1308.4244,4526.4821,1306.9263,4534.41,1312.77" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="4511.5" y="1279.0669">uses</text><!--MD5=[893519527aa85861eabddfb9d0f8733f]
link graph_py to logging.getLogger--><path d="M3991.25,1130.23 C3975.18,1163.33 3949.44,1207.3 3915.5,1236 C3889.03,1258.39 3862.73,1237.16 3843.5,1266 C3806.56,1321.41 3836.05,1405.69 3852.86,1443.91 " fill="none" id="graph_py-&gt;logging.getLogger" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3855.04,1448.77,3855.02,1438.9212,3853,1444.2051,3847.7161,1442.1851,3855.04,1448.77" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="3844.5" y="1279.0669">uses</text><!--MD5=[4660ce733ab1278867363ff81b09c274]
link graph_py to np.empty--><path d="M4017.42,1130.18 C4046.38,1318.42 4157.31,2032.49 4180.5,2075 C4204.76,2119.46 4230.32,2114.63 4264.5,2152 C4278.68,2167.5 4293.06,2186.62 4303.09,2200.63 " fill="none" id="graph_py-&gt;np.empty" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4306.06,2204.81,4304.1126,2195.1556,4303.166,2200.7327,4297.5889,2199.7861,4306.06,2204.81" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="4102.5" y="1660.0669">uses</text><!--MD5=[c2e463b9746bdbead8c63bcf9c5b8bfb]
link graph_py to AtomicContact--><path d="M3977.72,1130.18 C3949.23,1165.6 3904.58,1212.67 3853.5,1236 C3700.71,1305.78 3557.44,1162.18 3483.5,1313 C3407.53,1467.96 3375.01,1907.48 3333.5,2075 C3330.15,2088.51 3326.52,2091.23 3324.5,2105 C3323.4,2112.48 3320.37,2115.67 3324.5,2122 C3342.54,2149.67 3364.57,2134.37 3392.5,2152 C3397.19,2154.96 3401.88,2158.18 3406.52,2161.57 " fill="none" id="graph_py-&gt;AtomicContact" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3410.76,2164.71,3405.9257,2156.1293,3406.748,2161.726,3401.1513,2162.5484,3410.76,2164.71" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="3403.5" y="1660.0669">uses</text><!--MD5=[5e3f9b97ef501842764a8485aee9fdd4]
link graph_py to np.array--><path d="M4010.7,1130.2 C4011.95,1319.57 4020.76,2042.99 4082.5,2122 C4106.39,2152.58 4133.46,2128.71 4164.5,2152 C4181.71,2164.91 4195.62,2185.38 4204.36,2200.49 " fill="none" id="graph_py-&gt;np.array" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4206.91,2204.99,4205.9733,2195.1858,4204.4539,2200.6348,4199.0049,2199.1155,4206.91,2204.99" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="4024.5" y="1660.0669">uses</text><!--MD5=[e740b12d227d81064a0dded78b76e7a3]
link graph_py to np.transpose--><path d="M3977.69,1130.1 C3949.18,1165.48 3904.52,1212.54 3853.5,1236 C3790.42,1265.01 3589.18,1214.6 3542.5,1266 C3420.7,1400.12 3539.4,1926.72 3643.5,2075 C3692.67,2145.04 3787.13,2185.51 3846.54,2205.11 " fill="none" id="graph_py-&gt;np.transpose" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3851.46,2206.72,3844.1388,2200.1321,3846.7053,2205.1733,3841.6641,2207.7397,3851.46,2206.72" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="3508.5" y="1660.0669">uses</text><!--MD5=[d899954ea5a8218099d3b92f59fc032c]
link graph_py to np.unique--><path d="M3981.73,1130.14 C3960.97,1165.54 3934.69,1216.88 3923.5,1266 C3918.85,1286.41 3925.46,1292.09 3926.5,1313 C3933.23,1447.94 4009.65,1510.5 3926.5,1617 C3892.67,1660.33 3840.33,1603.67 3806.5,1647 C3801.85,1652.96 3804.93,1656.61 3806.5,1664 C3852.85,1881.96 3867.68,1950.95 4010.5,2122 C4025.67,2140.17 4037.09,2135.96 4054.5,2152 C4070.49,2166.73 4085.8,2186.26 4096.19,2200.61 " fill="none" id="graph_py-&gt;np.unique" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4099.25,2204.88,4097.2866,2195.2288,4096.3492,2200.8075,4090.7706,2199.8701,4099.25,2204.88" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="3807.5" y="1660.0669">uses</text><!--MD5=[461e7ab8df42d4cc0c479c858d857a22]
link graph_py to Residue--><path d="M3977.76,1130.27 C3949.3,1165.75 3904.67,1212.85 3853.5,1236 C3667.44,1320.18 3526.2,1152.04 3400.5,1313 C3302.32,1438.73 3421.84,1536.85 3325.5,1664 C3308.21,1686.82 3287.18,1672.31 3268.5,1694 C3151.44,1829.89 3230.05,1922.59 3135.5,2075 C3120.09,2099.84 3113.48,2105.29 3089.5,2122 C3062.73,2140.65 3047.52,2131.06 3022.5,2152 C2946.22,2215.85 2976.94,2278.47 2896.5,2337 C2726.64,2460.61 2469.98,2497.17 2357.57,2507.56 " fill="none" id="graph_py-&gt;Residue" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2352.33,2508.04,2361.6576,2511.2015,2357.3091,2507.5835,2360.9272,2503.2349,2352.33,2508.04" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="55" x="3269.5" y="1889.0669">residue1</text><!--MD5=[461e7ab8df42d4cc0c479c858d857a22]
link graph_py to Residue--><path d="M3978.14,1130.11 C3949.74,1165.74 3905,1213.14 3853.5,1236 C3677.99,1313.9 3605.44,1207.65 3422.5,1266 C3384.3,1278.18 3368.37,1280.07 3345.5,1313 C3254.85,1443.51 3392.49,1554.34 3277.5,1664 C3210.23,1728.16 3133.12,1625.3 3070.5,1694 C3006.35,1764.39 3108.64,2048.16 3048.5,2122 C3015.14,2162.96 2978.04,2123.61 2933.5,2152 C2843.53,2209.35 2867.67,2275.48 2780.5,2337 C2644.99,2432.64 2451.2,2481.76 2357.07,2501.23 " fill="none" id="graph_py-&gt;Residue-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2352.11,2502.24,2361.7281,2504.3596,2357.009,2501.2402,2360.1284,2496.5211,2352.11,2502.24" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="55" x="3071.5" y="1889.0669">residue2</text><!--MD5=[43ae2ee5d00e87ebdb7912cbd0cbf81e]
link graph_py to ResidueContact--><path d="M3977.78,1130.31 C3949.33,1165.81 3904.7,1212.92 3853.5,1236 C3778.5,1269.81 3565.79,1253.35 3484.5,1266 C3392.99,1280.23 3354.24,1255.68 3281.5,1313 C3162.85,1406.49 3254.72,1532.51 3129.5,1617 C3060.39,1663.64 2830.81,1611.22 2755.5,1647 C2576.4,1732.11 2653.92,2030.98 2697.38,2159.98 " fill="none" id="graph_py-&gt;ResidueContact" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2699.03,2164.87,2699.9168,2155.0611,2697.419,2160.1367,2692.3434,2157.6388,2699.03,2164.87" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="2756.5" y="1660.0669">uses</text><!--MD5=[2d542894eb9c52ccd51e5b39b33c5d5a]
reverse link Enum to MapMethod--><path d="M3353.37,2185.95 C3363.94,2160.81 3382.11,2128.8 3410,2113.5 C3499.23,2064.55 5146.27,2078.94 5242,2113.5 C5276.49,2125.95 5308.29,2152.03 5331.74,2175.38 " fill="none" id="Enum&lt;-MapMethod" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="3359.83,2188.67,3346.24,2204.92,3346.73,2183.74,3359.83,2188.67" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[44919acb1b2773f2740776d7d2496520]
link Augmentation to np.ndarray--><path d="M5790.7514,1532.5627 C5790.7514,1532.5627 5763.47,1593.55 5741.5,1617 C5692.15,1669.68 5643.42,1637.5 5598.5,1694 C5489.27,1831.4 5610.45,1943.22 5494.5,2075 C5415.77,2164.49 5120.26,2116.41 5051.5,2152 C5033.56,2161.29 5018.87,2178.72 5008.76,2193.6 " fill="none" id="Augmentation-np.ndarray" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="5001.66,2204.79,5009.8578,2199.3314,5004.3376,2200.5674,5003.1016,2195.0472,5001.66,2204.79" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="5004.3376" x2="5008.62" y1="2200.5674" y2="2193.815"/><polygon fill="#A80036" points="5794.92,1521.31,5789.0848,1525.5468,5790.7514,1532.5627,5796.5866,1528.3259,5794.92,1521.31" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="25" x="5599.5" y="1889.0669">axis</text><!--MD5=[58c7c8a5c3df28a4f4a797fbe06179b6]
link Grid to np.array--><path d="M4781.8676,2013.8988 C4781.8676,2013.8988 4723.35,2057.91 4693.5,2075 C4639.45,2105.94 4622.25,2108.33 4561.5,2122 C4496.78,2136.56 4322.11,2119.11 4264.5,2152 C4248.1,2161.36 4235.53,2178.54 4227.1,2193.29 " fill="none" id="Grid-np.array" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4221,2204.88,4228.7301,2198.7771,4223.3278,2200.4549,4221.65,2195.0526,4221,2204.88" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="4223.3278" x2="4227.06" y1="2200.4549" y2="2193.37"/><polygon fill="#A80036" points="4791.22,2006.38,4784.0375,2007.022,4781.8676,2013.8988,4789.0501,2013.2569,4791.22,2006.38" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="48" x="4628.5" y="2118.0669">_center</text><!--MD5=[c10099320c36ee6aae2c8f1957c74adb]
link Grid to np.linspace--><path d="M4829.9704,2086.0415 C4829.9704,2086.0415 4817.5,2110.72 4811.5,2122 C4798.23,2146.94 4781.28,2174.28 4768.79,2193.72 " fill="none" id="Grid-np.linspace" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4761.65,2204.72,4769.904,2199.3467,4764.3713,2200.5254,4763.1926,2194.9927,4761.65,2204.72" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="4764.3713" x2="4768.725" y1="2200.5254" y2="2193.815"/><polygon fill="#A80036" points="4835.3,2075.29,4829.0514,2078.8892,4829.9704,2086.0415,4836.219,2082.4423,4835.3,2075.29" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="21" x="4818.5" y="2118.0669">_xs</text><!--MD5=[c10099320c36ee6aae2c8f1957c74adb]
link Grid to np.linspace--><path d="M4782.9775,2057.0966 C4782.9775,2057.0966 4770.43,2069.5 4764.5,2075 C4747.41,2090.84 4732.28,2084.34 4721.5,2105 C4706.79,2133.2 4720.67,2169.13 4734.04,2193.26 " fill="none" id="Grid-np.linspace-1" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4740.84,2204.7,4739.6875,2194.9188,4738.2886,2200.4,4732.8074,2199.0011,4740.84,2204.7" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="4738.2886" x2="4734.2" y1="2200.4" y2="2193.52"/><polygon fill="#A80036" points="4791.35,2048.5,4784.2982,2050.0075,4782.9775,2057.0966,4790.0293,2055.5891,4791.35,2048.5" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="21" x="4722.5" y="2118.0669">_ys</text><!--MD5=[c10099320c36ee6aae2c8f1957c74adb]
link Grid to np.linspace--><path d="M4789.1885,2085.8502 C4789.1885,2085.8502 4783.1,2098.94 4780.5,2105 C4768.26,2133.49 4760.39,2168.26 4755.98,2192.06 " fill="none" id="Grid-np.linspace-2" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4753.72,2204.99,4759.2029,2196.8085,4754.5767,2200.0639,4751.3212,2195.4377,4753.72,2204.99" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="4754.5767" x2="4755.955" y1="2200.0639" y2="2192.18"/><polygon fill="#A80036" points="4794.46,2075.07,4788.2309,2078.7029,4789.1885,2085.8502,4795.4176,2082.2172,4794.46,2075.07" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="21" x="4781.5" y="2118.0669">_zs</text><!--MD5=[99fdee39ff3d08f5bd9a7cd3629ac81d]
link Grid to np.meshgrid--><path d="M4891.7757,2087.1182 C4891.7757,2087.1182 4880.75,2167.26 4877.38,2191.82 " fill="none" id="Grid-np.meshgrid" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4875.57,2204.96,4880.7493,2196.583,4876.2456,2200.0058,4872.8227,2195.5021,4875.57,2204.96" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="4876.2456" x2="4877.34" y1="2200.0058" y2="2192.085"/><polygon fill="#A80036" points="4893.41,2075.23,4888.6301,2080.6293,4891.7757,2087.1182,4896.5556,2081.7189,4893.41,2075.23" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="38" x="4888.5" y="2118.0669">_ygrid</text><!--MD5=[b23d10ce57ae65fbcc5e52d76a685f21]
link Grid to np.ndarray--><path d="M4964.0564,2086.948 C4964.0564,2086.948 4981.91,2167.62 4987.34,2192.17 " fill="none" id="Grid-np.ndarray" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="4990.17,2204.96,4992.1385,2195.3099,4989.0935,2200.0773,4984.3261,2197.0323,4990.17,2204.96" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="4989.0935" x2="4987.365" y1="2200.0773" y2="2192.27"/><polygon fill="#A80036" points="4961.47,2075.23,4958.8572,2081.9511,4964.0564,2086.948,4966.6692,2080.2268,4961.47,2075.23" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="41" x="4972.5" y="2118.0669">center</text><!--MD5=[b23d10ce57ae65fbcc5e52d76a685f21]
link Grid to np.ndarray--><path d="M5014.54,2075.28 C5017.61,2085.2 5020.3,2095.14 5022.5,2105 C5029.99,2138.58 5015.34,2177.33 5004.27,2200.18 " fill="none" id="Grid-&gt;np.ndarray" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="5001.97,2204.81,5009.5646,2198.5393,5004.2003,2200.335,5002.4046,2194.9707,5001.97,2204.81" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="29" x="5024.5" y="2118.0669">data</text><!--MD5=[b23d10ce57ae65fbcc5e52d76a685f21]
link Grid to np.ndarray--><path d="M5047.56,2065.12 C5053.43,2078.24 5058.52,2091.59 5062.5,2105 C5064.65,2112.24 5064.78,2114.8 5062.5,2122 C5052.75,2152.8 5029.44,2182.29 5012.61,2200.72 " fill="none" id="Grid-&gt;np.ndarray-1" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="5008.92,2204.71,5017.97,2200.8245,5012.3173,2201.0415,5012.1004,2195.3888,5008.92,2204.71" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="50" x="5064.5" y="2118.0669">position</text><!--MD5=[1b8dc25755c1039cf0947e4376911013]
link Grid to GridSettings--><path d="M5047.5,2056.31 C5056.16,2063.18 5065.17,2069.48 5074.5,2075 C5137.52,2112.28 5164.66,2090.85 5236.5,2105 C5336.73,2124.75 5363.34,2123.68 5461.5,2152 C5503.57,2164.14 5549.79,2181.34 5585.25,2195.41 " fill="none" id="Grid-&gt;GridSettings" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="5589.96,2197.29,5583.0706,2190.2518,5585.3127,2195.4454,5580.1192,2197.6875,5589.96,2197.29" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="51" x="5331.5" y="2118.0669">settings</text><!--MD5=[7c6d794045e1d160aa641e304e63ff2e]
link Grid to MapMethod--><path d="M5047.59,2052.67 C5056.31,2060.63 5065.29,2068.15 5074.5,2075 C5145.94,2128.17 5180.1,2111.66 5259.5,2152 C5271.87,2158.29 5284.71,2165.44 5297.09,2172.68 " fill="none" id="Grid-&gt;MapMethod" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="5301.62,2175.36,5295.8779,2167.3582,5297.3063,2172.8318,5291.8327,2174.2601,5301.62,2175.36" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="50" x="5177.5" y="2118.0669">method</text><!--MD5=[2de699e8968dec349cdab36bc9fa0c8c]
link grid_py to MapMethod--><path d="M5704.47,1113.64 C5711.64,1147 5727.89,1201.88 5761.5,1236 C5785.25,1260.12 5802.59,1248.39 5831.5,1266 C5859.54,1283.08 5874.5,1283.3 5888.5,1313 C5946.13,1435.21 5959.53,1502.07 5888.5,1617 C5848.27,1682.09 5783.09,1634.89 5734.5,1694 C5622.96,1829.69 5737.72,1936.66 5629.5,2075 C5604.33,2107.17 5510.9,2155.32 5443.71,2187.18 " fill="none" id="grid_py-MapMethod" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="5856.5" y="1660.0669">contains</text><polygon fill="#000000" points="5879,1669.1328,5882,1675.1328,5885,1669.1328,5879,1669.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[e90648042a3b7c575ba1ec989eab8c44]
link grid_py to Augmentation--><path d="M5707.93,1113.8 C5726.35,1176.68 5770.42,1327.15 5794.36,1408.89 " fill="none" id="grid_py-Augmentation" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="5755.5" y="1279.0669">contains</text><polygon fill="#000000" points="5778,1288.1328,5781,1294.1328,5784,1288.1328,5778,1288.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[752ee9be5200d4364a8e7ea345a035e6]
link grid_py to GridSettings--><path d="M5702.85,1113.63 C5708.52,1148.32 5723.4,1205.83 5761.5,1236 C5827.84,1288.52 5894.59,1201.63 5949.5,1266 C6050.75,1384.68 5985.69,1465.26 5949.5,1617 C5898.67,1830.11 5759.69,2053.19 5688.22,2158.28 " fill="none" id="grid_py-GridSettings" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="5941.5" y="1660.0669">contains</text><polygon fill="#000000" points="5964,1669.1328,5967,1675.1328,5970,1669.1328,5964,1669.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[57c21b6056183c01731dfe651390d8bb]
link grid_py to Grid--><path d="M5698.98,1113.69 C5697.67,1152.65 5693.14,1224.17 5677.5,1283 C5673.77,1297.04 5669.06,1299.2 5664.5,1313 C5620.96,1444.74 5697.51,1525.17 5593.5,1617 C5545.93,1659 5371.7,1634.39 5309.5,1647 C5284.01,1652.17 5278.82,1658.06 5253.5,1664 C5174.97,1682.42 5144.28,1653.53 5074.5,1694 C5065.22,1699.38 5056.26,1705.55 5047.65,1712.29 " fill="none" id="grid_py-Grid" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#000000" points="5672.5,1463.5664,5666.5,1466.5664,5672.5,1469.5664,5672.5,1463.5664" style="stroke: #000000; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="5678.5" y="1469.5669">contains</text><!--MD5=[9445ea42fec7ab9c2b51d4caeacbd30e]
link grid_py to logging.getLogger--><path d="M5655.46,1108.68 C5593.14,1141.35 5474.93,1200.25 5368.5,1236 C5277.84,1266.46 5253.38,1270.97 5158.5,1283 C4951.83,1309.2 4425.03,1268.54 4221.5,1313 C4093.71,1340.92 3954.04,1412.87 3893.43,1446.37 " fill="none" id="grid_py-&gt;logging.getLogger" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3888.85,1448.9,3898.6621,1448.0504,3893.2268,1446.4827,3894.7945,1441.0474,3888.85,1448.9" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="5265.5" y="1279.0669">uses</text><!--MD5=[9eddd6d71b6e5157d1f8ee040aa02e17]
link AtomicForcefield to Residue--><path d="M2512.31,1540.22 C2539.1,1717.27 2597.36,2159.37 2533.5,2290 C2493.93,2370.94 2411.72,2438.04 2356.56,2476.47 " fill="none" id="AtomicForcefield-&gt;Residue" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="2352.31,2479.41,2361.9882,2477.5846,2356.4235,2476.5677,2357.4405,2471.003,2352.31,2479.41" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="47" x="2563.5" y="2118.0669">residue</text><!--MD5=[b7c9e06287ba8c4ccbf2a20d578afbfd]
link AtomicForcefield to Atom--><path d="M2595.51,1521.56 C2654.06,1553.65 2731.63,1592.41 2804.5,1617 C2871.4,1639.58 2912.02,1595.67 2960.5,1647 C3009.99,1699.4 3025.91,2220.92 3046.5,2290 C3100.48,2471.11 3205.27,2666.57 3268.16,2775.22 " fill="none" id="AtomicForcefield-&gt;Atom" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="3270.75,2779.68,3269.6743,2769.8901,3268.2324,2775.3601,3262.7624,2773.9182,3270.75,2779.68" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="34" x="3047.5" y="2225.5669">atom</text><!--MD5=[56f106d49501994eef272719e64ace96]
link __init___py to AtomicForcefield--><path d="M2228.36,1134.57 C2248.67,1164.51 2275.71,1203.1 2301.5,1236 C2343.07,1289.03 2392.93,1346.15 2432.35,1389.95 " fill="none" id="__init___py-AtomicForcefield" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="2339.5" y="1279.0669">contains</text><polygon fill="#000000" points="2362,1288.1328,2365,1294.1328,2368,1288.1328,2362,1288.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[56f106d49501994eef272719e64ace96]
link __init___py to AtomicForcefield--><path d="M2211.74,1134.62 C2227.05,1176.76 2252.83,1237.46 2287.5,1283 C2319.27,1324.72 2362.17,1363.47 2401.14,1394.33 " fill="none" id="__init___py-&gt;AtomicForcefield" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2405.39,1397.67,2400.8026,1388.9548,2401.4649,1394.5727,2395.8469,1395.235,2405.39,1397.67" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="2288.5" y="1279.0669">uses</text><!--MD5=[b73767a708dc9398e50473bf3a75a59a]
link __init___py to logging.getLogger--><path d="M2216.42,1134.6 C2233.83,1169.24 2262.14,1213.21 2301.5,1236 C2365.03,1272.79 2558.02,1254.31 2630.5,1266 C2663.39,1271.3 2670.46,1278.74 2703.5,1283 C2763.25,1290.7 3736.74,1280.55 3787.5,1313 C3833.62,1342.48 3852.38,1409.46 3859.14,1443.43 " fill="none" id="__init___py-&gt;logging.getLogger" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="3860.13,1448.58,3862.3625,1438.9875,3859.1879,1443.6696,3854.5058,1440.4949,3860.13,1448.58" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="2704.5" y="1279.0669">uses</text><!--MD5=[89916aa9f242923ebde39face86c629d]
reverse link Enum to PatchActionType--><path d="M3353.37,2185.95 C3363.94,2160.81 3382.11,2128.8 3410,2113.5 C3479.48,2075.39 6190,2082.66 6263,2113.5 C6298.48,2128.49 6327.87,2162.08 6346.34,2187.75 " fill="none" id="Enum&lt;-PatchActionType" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="none" points="3359.83,2188.67,3346.24,2204.92,3346.73,2183.74,3359.83,2188.67" style="stroke: #A80036; stroke-width: 1.0;"/><!--MD5=[34425dff9d64f5d65477cd10e095d69f]
link PatchAction to PatchSelection--><path d="M6540.2253,2295.4856 C6540.2253,2295.4856 6565.06,2411.37 6574.76,2456.67 " fill="none" id="PatchAction-PatchSelection" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="6577.5,2469.48,6579.5328,2459.8432,6576.4561,2464.5902,6571.7091,2461.5134,6577.5,2469.48" style="stroke: #A80036; stroke-width: 1.0;"/><line style="stroke: #A80036; stroke-width: 1.0;" x1="6576.4561" x2="6574.78" y1="2464.5902" y2="2456.77"/><polygon fill="#A80036" points="6537.72,2283.75,6535.0608,2290.4529,6540.2253,2295.4856,6542.8845,2288.7827,6537.72,2283.75" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="57" x="6548.5" y="2333.0669">selection</text><!--MD5=[d66e0683aeba18e2c9b881c9a2ee9035]
link patch_py to PatchActionType--><path d="M6574.41,1903.96 C6538.77,1958.4 6433.76,2118.8 6388.57,2187.82 " fill="none" id="patch_py-PatchActionType" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="6438.5" y="2118.0669">contains</text><polygon fill="#000000" points="6461,2127.1328,6464,2133.1328,6467,2127.1328,6461,2127.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[d964ef032d5f9ad47e6fdc0274145ab4]
link patch_py to PatchSelection--><path d="M6590.38,1903.6 C6598.18,1940.99 6615.53,2029.6 6621.5,2105 C6629.65,2207.84 6624.37,2234.32 6614.5,2337 C6610.13,2382.51 6601.36,2434.16 6594.79,2469.38 " fill="none" id="patch_py-PatchSelection" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="6626.5" y="2225.5669">contains</text><polygon fill="#000000" points="6649,2234.6328,6652,2240.6328,6655,2234.6328,6649,2234.6328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[c7f4e6b94bb3b7b7fe853d48d2babbf7]
link patch_py to PatchAction--><path d="M6583.08,1903.96 C6574.24,1951.62 6550.36,2080.5 6535.96,2158.17 " fill="none" id="patch_py-PatchAction" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="6545.5" y="2118.0669">contains</text><polygon fill="#000000" points="6568,2127.1328,6571,2133.1328,6574,2127.1328,6568,2127.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[8622e6a07f971158383a6a1a0cecf57e]
link patch_py to PatchParser--><path d="M6599.58,1903.96 C6634.32,1952.99 6729.95,2087.97 6784.34,2164.73 " fill="none" id="patch_py-PatchParser" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="6753.5" y="2118.0669">contains</text><polygon fill="#000000" points="6776,2127.1328,6779,2133.1328,6782,2127.1328,6776,2127.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[f398685c2121559e93757b8c6c008928]
link pssm_py to TextIO--><path d="M954.79,2254.65 C949.8,2314.86 939.28,2441.74 935.18,2491.18 " fill="none" id="pssm_py-&gt;TextIO" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="934.76,2496.27,939.4915,2487.6321,935.174,2491.2872,931.519,2486.9697,934.76,2496.27" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="25" x="950.5" y="2333.0669">file_</text><!--MD5=[8199a3fcb92c87f5622b92b2b15f40bf]
link pssm_py to Chain--><path d="M968.69,2254.68 C974.59,2273.53 981.26,2297.82 984.5,2320 C987.52,2340.67 985.28,2346.11 985.5,2367 C986.88,2496.33 987.73,2528.69 985.5,2658 C985.1,2681.23 984.44,2705.96 983.68,2729.86 " fill="none" id="pssm_py-&gt;Chain" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="983.52,2734.94,987.8007,2726.0701,983.6771,2729.9425,979.8047,2725.8188,983.52,2734.94" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="34" x="988.5" y="2517.0669">chain</text><!--MD5=[6cb424b64fc3b2751c899e126a80146a]
link pssm_py to Residue--><path d="M986.25,2254.5 C998.79,2267.06 1014.31,2280.63 1030.5,2290 C1061.1,2307.72 1148.05,2329.03 1182.5,2337 C1585.2,2430.14 2081.08,2487.98 2245.57,2505.69 " fill="none" id="pssm_py-&gt;Residue" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="2250.81,2506.25,2242.2974,2501.2967,2245.8395,2505.7072,2241.429,2509.2494,2250.81,2506.25" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="1183.5" y="2333.0669">uses</text><!--MD5=[0dd104cf36c5cf1ed78049915ff3d3d2]
link pssm_py to PssmRow--><path d="M976.59,2254.68 C987.33,2273.53 1000.7,2297.82 1011.5,2320 C1021.44,2340.41 1023.66,2345.7 1031.5,2367 C1090.68,2527.81 1111.58,2567.24 1146.5,2735 C1179.09,2891.59 1193.03,3079.53 1198.44,3177.55 " fill="none" id="pssm_py-&gt;PssmRow" style="stroke: #A80036; stroke-width: 1.0;"/><polygon fill="#A80036" points="1198.73,3182.72,1202.2085,3173.5059,1198.4439,3177.7282,1194.2216,3173.9636,1198.73,3182.72" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="30" x="1140.5" y="2701.0669">uses</text><!--MD5=[0097c3c0f081354ea3ddcc2a15688627]
link residue_py to ResidueClassCriterium--><path d="M1804.94,1903.96 C1764.75,1951.62 1656.11,2080.5 1590.63,2158.17 " fill="none" id="residue_py-ResidueClassCriterium" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="1631.5" y="2118.0669">contains</text><polygon fill="#000000" points="1654,2127.1328,1657,2133.1328,1660,2127.1328,1654,2127.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[4023430f0d671245341e5b2f489e6a5c]
link residue_py to ResidueClassParser--><path d="M1816.25,1903.96 C1804.63,1954.43 1772.05,2095.96 1754.7,2171.33 " fill="none" id="residue_py-ResidueClassParser" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="1769.5" y="2118.0669">contains</text><polygon fill="#000000" points="1792,2127.1328,1795,2133.1328,1798,2127.1328,1792,2127.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[480a1f6526185e76a749d6c8fb93a7c6]
link top_py to TopRowObject--><path d="M5621.72,107.83 C5614,129.37 5601.57,166.31 5594.5,199 C5572.2,302.1 5560.01,424.88 5554.4,494.36 " fill="none" id="top_py-TopRowObject" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="5595.5" y="212.0669">contains</text><polygon fill="#000000" points="5618,221.1328,5621,227.1328,5624,221.1328,5618,221.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[2dbf9015f43e99658d91b16b29b9e8f6]
link top_py to TopParser--><path d="M5636.46,107.71 C5645.47,129.13 5659.89,165.96 5667.5,199 C5691.15,301.62 5700.62,424.57 5704.3,494.2 " fill="none" id="top_py-TopParser" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="5670.5" y="212.0669">contains</text><polygon fill="#000000" points="5693,221.1328,5696,227.1328,5699,221.1328,5693,221.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[2532f6b06d1a4776c7c9a8259dedbfba]
link vdwparam_py to VanderwaalsParam--><path d="M5957.33,107.59 C5951.28,129.21 5941.23,166.53 5934.5,199 C5913.68,299.47 5896.25,417.51 5886.61,487.77 " fill="none" id="vdwparam_py-VanderwaalsParam" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="5935.5" y="212.0669">contains</text><polygon fill="#000000" points="5958,221.1328,5961,227.1328,5964,221.1328,5958,221.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[0c79e0090b3967a851074024b24b3c36]
link vdwparam_py to ParamParser--><path d="M5971.76,107.56 C5982.24,128.84 5998.95,165.55 6007.5,199 C6037.91,317.93 6044.61,465.57 6046.08,523.99 " fill="none" id="vdwparam_py-ParamParser" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="6010.5" y="212.0669">contains</text><polygon fill="#000000" points="6033,221.1328,6036,227.1328,6039,221.1328,6033,221.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[b9de3efaad2cd705a8a6041285088495]
link PssmRow to AminoAcid--><path d="M1221.73,3308.11 C1236,3345.11 1257.89,3391.53 1287.5,3426 C1311.68,3454.14 1323.58,3455.89 1356.5,3473 C1529.89,3563.13 1747.64,3636.06 1867.04,3672.9 " fill="none" id="PssmRow-&gt;AminoAcid" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><polygon fill="#A80036" points="1871.95,3674.41,1864.5284,3667.9354,1867.172,3672.9366,1862.1709,3675.5802,1871.95,3674.41" style="stroke: #A80036; stroke-width: 1.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="73" x="1357.5" y="3469.0669">amino_acid</text><!--MD5=[cc2736c2361628946fba8110e6ab7789]
link pssmdata_py to PssmRow--><path d="M1318.88,2880.86 C1305.6,2909.64 1279.83,2967.33 1262.5,3018 C1243.72,3072.91 1226.95,3136.87 1215.77,3182.79 " fill="none" id="pssmdata_py-PssmRow" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="1263.5" y="3031.0669">contains</text><polygon fill="#000000" points="1286,3040.1328,1289,3046.1328,1292,3040.1328,1286,3040.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[e884157b75b645f9ffe6eb298468d6c5]
link pssmdata_py to PssmTable--><path d="M1328.78,2880.67 C1332.67,2935.68 1344.43,3102 1350.61,3189.43 " fill="none" id="pssmdata_py-PssmTable" style="stroke: #A80036; stroke-width: 1.0; stroke-dasharray: 7.0,7.0;"/><text fill="#000000" font-family="sans-serif" font-size="13" lengthAdjust="spacingAndGlyphs" textLength="54" x="1340.5" y="3031.0669">contains</text><polygon fill="#000000" points="1363,3040.1328,1366,3046.1328,1369,3040.1328,1363,3040.1328" style="stroke: #000000; stroke-width: 1.0;"/><!--MD5=[fceb8d9d290746b9ec10af3c4fcdef85]
link edgestorage_py to gridstorage_py--><!--MD5=[792039e0e87c4ed0b280c603eefa037a]
link gridstorage_py to losstypes_py--><!--MD5=[54d9ad415c32371b36f74edde331323e]
link edgestorage_py to nodestorage_py--><!--MD5=[d4d37f5a470328ab12b5dab90c48fe13]
link nodestorage_py to targetstorage_py--><text fill="#888888" font-family="sans-serif" font-size="10" lengthAdjust="spacingAndGlyphs" textLength="188" x="3362.5" y="4097.2822">Generated by GitUml www.gituml.com</text><!--MD5=[6a8730a5e8551496509a4969d3214416]
@startuml
class __init___py <<module>> << (M,orchid) >> #DarkSeaGreen {
    __version__
}
class __init___py <<module>> << (M,orchid) >> #DarkSeaGreen {
}
class aminoacidlist_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    alanine
    amino_acids
    arginine
    asparagine
    aspartate
    cysteine
    glutamate
    glutamine
    glycine
    histidine
    isoleucine
    leucine
    lysine
    methionine
    phenylalanine
    proline
    pyrrolysine
    selenocysteine
    serine
    threonine
    tryptophan
    tyrosine
    valine
    - - -
    convert_aa_nomenclature()
}

aminoacidlist_py - -> AminoAcid : uses
aminoacidlist_py - -> AminoAcid : aa
class edgestorage_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    COVALENT
    DISTANCE
    EDGE
    ELEC
    INDEX
    NAME
    SAMECHAIN
    SAMERES
    VDW
}
class __init___py <<module>> << (M,orchid) >> #DarkSeaGreen {
}
class gridstorage_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    MAPPED_FEATURES
}
class losstypes_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    binary_classification_losses
    classification_losses
    classification_tested
    multi_classification_losses
    other_losses
    regression_losses
}
class nodestorage_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    ATOMCHARGE
    ATOMTYPE
    BSA
    CHAINID
    CONSERVATION
    DIFFCHARGE
    DIFFCONSERVATION
    DIFFHBACCEPTORS
    DIFFHBDONORS
    DIFFMASS
    DIFFPI
    DIFFPOLARITY
    DIFFSIZE
    HBACCEPTORS
    HBDONORS
    HSE
    INFOCONTENT
    IRCTOTAL
    IRC_FEATURES
    IRC_NEGNEG
    IRC_NEGPOS
    IRC_NONNEG
    IRC_NONNON
    IRC_NONPOL
    IRC_NONPOS
    IRC_POLNEG
    IRC_POLPOL
    IRC_POLPOS
    IRC_POSPOS
    NAME
    NODE
    PDBOCCUPANCY
    POLARITY
    POSITION
    PSSM
    RESCHARGE
    RESDEPTH
    RESMASS
    RESPI
    RESSIZE
    RESTYPE
    SASA
    SECSTRUCT
    VARIANTRES
}
class targetstorage_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    BINARY
    CAPRI
    CLASSIF
    DOCKQ
    FNAT
    IRMSD
    LRMSD
    REGRESS
    VALUES
}
class __init___py <<module>> << (M,orchid) >> #DarkSeaGreen {
}
class components_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    _log
    - - -
    add_features()
}

components_py - -> logging.getLogger : uses
components_py - -> Graph : graph
components_py - -> np.zeros : uses
class conservation_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    - - -
    add_features()
}

conservation_py - -> Graph : graph
conservation_py - -> np.array : uses
class contact_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    _log
    covalent_cutoff
    cutoff_13
    cutoff_14
    - - -
    _get_nonbonded_energy()
    add_features()
}

contact_py - -> logging.getLogger : uses
contact_py - -> UnknownType : distances
contact_py - -> np.sqrt : uses
contact_py - -> np.logical_and : uses
contact_py - -> Graph : graph
contact_py - -> np.min : uses
contact_py - -> np.sum : uses
class exposure_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    _log
    - - -
    add_features()
    handle_sigint()
    handle_timeout()
    space_if_none()
}

exposure_py - -> logging.getLogger : uses
exposure_py - -> Graph : graph
exposure_py - -> PDBParser : uses
exposure_py - -> HSExposureCA : uses
exposure_py - -> np.array : uses
class _ContactDensity {
    connections
    densities
    id
    polarity
    res
    __init__()
}

_ContactDensity *- -> Polarity : polarity
class irc_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    _log
    - - -
    _id_from_residue()
    add_features()
    get_IRCs()
}

irc_py .. _ContactDensity : contains >
irc_py - -> logging.getLogger : uses
irc_py - -> UnknownType : residue_contacts
irc_py - -> pdb2sql.interface : uses
irc_py - -> _ContactDensity : uses
irc_py - -> Graph : graph
class DSSPError {
}

Exception <|- DSSPError

class SecondarySctructure {
    COIL
    HELIX
    STRAND
    onehot
}

Enum <|- SecondarySctructure
class secondary_structure_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    - - -
    _check_pdb()
    _classify_secstructure()
    _get_records()
    _get_secstructure()
    add_features()
}

secondary_structure_py .. DSSPError : contains >
secondary_structure_py .. SecondarySctructure : contains >
secondary_structure_py - -> PDBParser : uses
secondary_structure_py - -> DSSP : uses
secondary_structure_py - -> Graph : graph
class surfacearea_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    - - -
    add_bsa()
    add_features()
    add_sasa()
}

surfacearea_py - -> Graph : graph
surfacearea_py - -> freesasa.Structure : uses
surfacearea_py - -> freesasa.calc : uses
surfacearea_py - -> freesasa.selectArea : uses
class __init___py <<module>> << (M,orchid) >> #DarkSeaGreen {
}
class Polarity {
    NEGATIVE
    NONPOLAR
    POLAR
    POSITIVE
    onehot
}

Enum <|- Polarity

class AminoAcid {
    _charge
    _hydrogen_bond_acceptors
    _hydrogen_bond_donors
    _index
    _mass
    _name
    _one_letter_code
    _pI
    _polarity
    _size
    _three_letter_code
    charge
    hydrogen_bond_acceptors
    hydrogen_bond_donors
    index
    mass
    name
    one_letter_code
    onehot
    pI
    polarity
    size
    three_letter_code
    __eq__()
    __hash__()
    __init__()
    __repr__()
}

AminoAcid *- -> Polarity : _polarity
AminoAcid *- -> Polarity : polarity
class aminoacid_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

aminoacid_py .. Polarity : contains >
aminoacid_py .. AminoAcid : contains >
class AtomicElement {
    C
    H
    N
    O
    P
    S
    onehot
}

Enum <|- AtomicElement

class Atom {
    _element
    _name
    _occupancy
    _position
    _residue
    element
    name
    occupancy
    position
    residue
    __eq__()
    __hash__()
    __init__()
    __repr__()
    change_altloc()
}

Atom *- -> AtomicElement : element
Atom *- -> np.array : position
Atom *- -> Residue : residue
Atom ..> Atom : alternative_atom
class atom_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

atom_py .. AtomicElement : contains >
atom_py .. Atom : contains >
class Pair {
    item1
    item2
    __eq__()
    __hash__()
    __init__()
    __iter__()
    __repr__()
}


class Contact {
}

Pair <|- Contact
ABC <|- Contact

class ResidueContact {
    _residue1
    _residue2
    residue1
    residue2
    __init__()
}

Contact <|- ResidueContact
ResidueContact *- -> Residue : residue1
ResidueContact *- -> Residue : residue2

class AtomicContact {
    _atom1
    _atom2
    atom1
    atom2
    __init__()
}

Contact <|- AtomicContact
AtomicContact *- -> Atom : atom1
AtomicContact *- -> Atom : atom2
class pair_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

pair_py .. Pair : contains >
pair_py .. Contact : contains >
pair_py .. ResidueContact : contains >
pair_py .. AtomicContact : contains >
class Residue {
    _amino_acid
    _atoms
    _chain
    _insertion_code
    _number
    amino_acid
    atoms
    chain
    insertion_code
    number
    number_string
    position
    __eq__()
    __hash__()
    __init__()
    __repr__()
    add_atom()
    get_center()
    get_pssm()
}

Residue *- -> Chain : chain
Residue ..> Atom : atom

class SingleResidueVariant {
    _residue
    _variant_amino_acid
    residue
    variant_amino_acid
    wildtype_amino_acid
    __init__()
}

SingleResidueVariant *- -> Residue : _residue
SingleResidueVariant *- -> Residue : residue
SingleResidueVariant *- -> AminoAcid : variant_amino_acid
class residue_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

residue_py .. Residue : contains >
residue_py .. SingleResidueVariant : contains >
class PDBStructure {
    _chains
    _id
    chains
    id
    __eq__()
    __hash__()
    __init__()
    __repr__()
    add_chain()
    get_atoms()
    get_chain()
    has_chain()
}

PDBStructure *- -> Chain : _chains
PDBStructure ..> Chain : chain

class Chain {
    _id
    _model
    _pssm
    _residues
    id
    model
    pssm
    residues
    __eq__()
    __hash__()
    __init__()
    __repr__()
    add_residue()
    get_atoms()
    get_residue()
    has_residue()
}

Chain *- -> PDBStructure : model
Chain *- -> PssmRow : pssm
Chain ..> Residue : residue
class structure_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

structure_py .. PDBStructure : contains >
structure_py .. Chain : contains >
class Query {
    _model_id
    _pssm_required
    chain_ids
    distance_cutoff
    model_id
    pdb_path
    pssm_paths
    resolution
    suppress_pssm_errors
    targets
    variant
    __post_init__()
    __repr__()
    _build_helper()
    _check_pssm()
    _load_pssm_data()
    _load_structure()
    _set_graph_targets()
    build()
    get_query_id()
}

Query *- -> UnknownType : resolution
Query *- -> UnknownType : chain_ids
Query *- -> UnknownType : pssm_paths
Query *- -> UnknownType : targets
Query ..> Graph : graph
Query ..> PDBStructure : structure
Query ..> Literal : verbosity
Query ..> list : feature_modules

class SingleResidueVariantQuery {
    insertion_code
    radius
    residue_id
    variant
    variant_amino_acid
    variant_chain_id
    variant_residue_number
    wildtype_amino_acid
    __post_init__()
    _build_helper()
    get_query_id()
}

Query <|- SingleResidueVariantQuery
SingleResidueVariantQuery *- -> UnknownType : insertion_code
SingleResidueVariantQuery *- -> AminoAcid : wildtype_amino_acid
SingleResidueVariantQuery *- -> AminoAcid : variant_amino_acid
SingleResidueVariantQuery *- -> SingleResidueVariant : variant
SingleResidueVariantQuery ..> Residue : variant_residue

class ProteinProteinInterfaceQuery {
    __post_init__()
    _build_helper()
    get_query_id()
}

Query <|- ProteinProteinInterfaceQuery

class QueryCollection {
    _cpu_count
    _feature_modules
    _grid_augmentation_count
    _grid_map_method
    _grid_settings
    _ids_count
    _prefix
    _queries
    queries
    __contains__()
    __init__()
    __iter__()
    __len__()
    _process_one_query()
    _set_feature_modules()
    add()
    export_dict()
    process()
}

QueryCollection *- -> "*" Query : _queries
QueryCollection *- -> UnknownType : _ids_count
QueryCollection *- -> UnknownType : _prefix
QueryCollection *- -> UnknownType : _cpu_count
QueryCollection *- -> UnknownType : _grid_settings
QueryCollection *- -> UnknownType : _grid_map_method
QueryCollection ..> Query : query
QueryCollection ..> UnknownType : feature_modules
QueryCollection ..> UnknownType : cpu_count
QueryCollection ..> UnknownType : grid_settings
QueryCollection ..> UnknownType : grid_map_method
class query_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    VALID_RESOLUTIONS
    _log
}

query_py .. Query : contains >
query_py .. SingleResidueVariantQuery : contains >
query_py .. ProteinProteinInterfaceQuery : contains >
query_py .. QueryCollection : contains >
query_py - -> logging.getLogger : uses
class __init___py <<module>> << (M,orchid) >> #DarkSeaGreen {
}
class target_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    - - -
    add_target()
    compute_ppi_scores()
}

target_py - -> np.loadtxt : uses
target_py - -> glob.glob : uses
target_py - -> h5py.File : uses
target_py - -> StructureSimilarity : uses
class __init___py <<module>> << (M,orchid) >> #DarkSeaGreen {
}
class buildgraph_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    _amino_acids_by_code
    _elements_by_name
    _log
    - - -
    _add_atom_data_to_structure()
    _add_atom_to_residue()
    get_contact_atoms()
    get_residue_contact_pairs()
    get_structure()
    get_surrounding_residues()
}

buildgraph_py - -> logging.getLogger : uses
buildgraph_py - -> PDBStructure : structure
buildgraph_py - -> np.array : uses
buildgraph_py - -> Chain : uses
buildgraph_py - -> Residue : uses
buildgraph_py - -> Atom : uses
buildgraph_py - -> PDBStructure : uses
buildgraph_py - -> Pair : uses
buildgraph_py - -> UnknownType : structure
buildgraph_py - -> Residue : residue
buildgraph_py - -> np.min : uses
class Edge {
    features
    id
    position1
    position2
    __init__()
    add_feature()
    has_nan()
}

Edge ..> Contact : id_

class Node {
    _type
    features
    id
    position
    type
    __init__()
    add_feature()
    has_nan()
}


class Graph {
    _edges
    _nodes
    center
    cutoff_distance
    edges
    id
    nodes
    targets
    __init__()
    _find_unused_augmentation_name()
    _map_point_features()
    add_edge()
    add_node()
    get_all_chains()
    get_edge()
    get_node()
    has_nan()
    map_to_grid()
    write_as_grid_to_hdf5()
    write_to_hdf5()
}

Graph *- -> Node : _nodes
Graph *- -> Edge : _edges
Graph *- -> np.array : center
Graph ..> Node : node
Graph ..> Edge : edge
Graph ..> Contact : id_
Graph ..> Grid : grid
Graph ..> MapMethod : method
Graph ..> GridSettings : settings
class graph_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    _log
    - - -
    build_atomic_graph()
    build_residue_graph()
}

graph_py .. Edge : contains >
graph_py .. Node : contains >
graph_py .. Graph : contains >
graph_py - -> logging.getLogger : uses
graph_py - -> np.empty : uses
graph_py - -> Graph : uses
graph_py - -> AtomicContact : uses
graph_py - -> Node : uses
graph_py - -> np.array : uses
graph_py - -> np.transpose : uses
graph_py - -> np.unique : uses
graph_py - -> Residue : residue1
graph_py - -> Residue : residue2
graph_py - -> ResidueContact : uses
graph_py - -> Edge : uses
class MapMethod {
    BSP_LINE
    FAST_GAUSSIAN
    GAUSSIAN
    NEAREST_NEIGHBOURS
}

Enum <|- MapMethod

class Augmentation {
    _angle
    _axis
    angle
    axis
    __init__()
}

Augmentation *- -> np.ndarray : axis

class GridSettings {
    _points_counts
    _sizes
    points_counts
    resolutions
    sizes
    __init__()
}


class Grid {
    _center
    _features
    _settings
    _xs
    _ygrid
    _ys
    _zs
    center
    features
    id
    xgrid
    xs
    ygrid
    ys
    zgrid
    zs
    __init__()
    _get_atomic_density_koes()
    _get_mapped_feature_bsp_line()
    _get_mapped_feature_fast_gaussian()
    _get_mapped_feature_gaussian()
    _get_mapped_feature_nearest_neighbour()
    _set_mesh()
    add_feature_values()
    map_feature()
    to_hdf5()
}

Grid *- -> np.array : _center
Grid *- -> np.linspace : _xs
Grid *- -> np.linspace : _ys
Grid *- -> np.linspace : _zs
Grid *- -> np.meshgrid : _ygrid
Grid *- -> np.ndarray : center
Grid ..> GridSettings : settings
Grid ..> np.ndarray : data
Grid ..> np.ndarray : position
Grid ..> MapMethod : method
class grid_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    _log
}

grid_py .. MapMethod : contains >
grid_py .. Augmentation : contains >
grid_py .. GridSettings : contains >
grid_py .. Grid : contains >
grid_py - -> logging.getLogger : uses
class AtomicForcefield {
    _patch_actions
    _residue_class_criteria
    _top_rows
    _vanderwaals_parameters
    __init__()
    _find_matching_residue_class()
    get_charge()
    get_vanderwaals_parameters()
}

AtomicForcefield ..> Residue : residue
AtomicForcefield ..> Atom : atom
class __init___py <<module>> << (M,orchid) >> #DarkSeaGreen {
    _forcefield_directory_path
    _log
    atomic_forcefield
}

__init___py .. AtomicForcefield : contains >
__init___py - -> logging.getLogger : uses
__init___py - -> AtomicForcefield : uses
class PatchActionType {
    ADD
    MODIFY
}

Enum <|- PatchActionType

class PatchSelection {
    atom_name
    residue_type
    __init__()
}


class PatchAction {
    kwargs
    selection
    type
    __contains__()
    __getitem__()
    __init__()
}

PatchAction *- -> PatchSelection : selection

class PatchParser {
    ACTION_PATTERN
    NUMBER_VAR_PATTERN
    STRING_VAR_PATTERN
    _parse_action_type()
    parse()
}

class patch_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

patch_py .. PatchActionType : contains >
patch_py .. PatchSelection : contains >
patch_py .. PatchAction : contains >
patch_py .. PatchParser : contains >
class pssm_py <<module>> << (M,orchid) >> #DarkSeaGreen {
    - - -
    parse_pssm()
}

pssm_py - -> TextIO : file_
pssm_py - -> Chain : chain
pssm_py - -> Residue : uses
pssm_py - -> PssmRow : uses
class ResidueClassCriterium {
    absent_atom_names
    amino_acid_names
    class_name
    present_atom_names
    __init__()
    matches()
}


class ResidueClassParser {
    _RESIDUE_ATOMS_PATTERN
    _RESIDUE_CLASS_PATTERN
    _parse_amino_acids()
    parse()
}

class residue_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

residue_py .. ResidueClassCriterium : contains >
residue_py .. ResidueClassParser : contains >
class TopRowObject {
    atom_name
    kwargs
    residue_name
    __getitem__()
    __init__()
}


class TopParser {
    _LINE_PATTERN
    _NUMBER_PATTERN
    _VAR_PATTERN
    _parse_value()
    parse()
}

class top_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

top_py .. TopRowObject : contains >
top_py .. TopParser : contains >
class VanderwaalsParam {
    epsilon_14
    epsilon_main
    sigma_14
    sigma_main
    __init__()
    __str__()
}


class ParamParser {
    parse()
}

class vdwparam_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

vdwparam_py .. VanderwaalsParam : contains >
vdwparam_py .. ParamParser : contains >
class PssmRow {
    _conservations
    _information_content
    conservations
    information_content
    __init__()
    get_conservation()
}

PssmRow ..> AminoAcid : amino_acid

class PssmTable {
    _rows
    __contains__()
    __getitem__()
    __init__()
    update()
}

class pssmdata_py <<module>> << (M,orchid) >> #DarkSeaGreen {
}

pssmdata_py .. PssmRow : contains >
pssmdata_py .. PssmTable : contains >
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Java Runtime: OpenJDK Runtime Environment
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