This repo is designed to showcase some of the Nextflow bioinformatics work I am undertaking independently.
I am using Nextflow on WSL
Simple initial script that I used to index a target genome with BWA
Genome: https://www.ncbi.nlm.nih.gov/nuccore/CP000325.1/
Pipeline that uses nextflow to download 2 .fastq.gz files and assemble them with SPAdes (genome assembly algorithm)
Two distinct processes - download and assemble
spades.py was installed via conda