Automation of the pipeline in using SVRTK libraries on FETAL MRI data. For scientific research purposes only.
The sole purpose of this library is to make running of SVRTK (link) libraries easier for medical researchers.
Installed SVRTK
Installed dcm2niix
Download the repositoty
Open terminal at repository (Right click and choose, open terminal at folder)
write command chmod u+x run.sh
write command chmod u+x runDSVR.sh
Open terminal at repository (Folder with code that you've downloaded) (Do so by right click and choose: open terminal at folder). Now run the command
./run.sh
Choose patient folder (Stacks in STACKS and Mask in MASK) Choose Template stack
Wait for SVRTK to run
Resulting file is in the "out" folder